API for CGNM
Cluster Gauss-Newton Method
| Global functions | |
|---|---|
| $,CGNM_result-method | Man page |
| $<-,CGNM_result-method | Man page |
| .CGNM_compileODE | Source code |
| .CGNM_extractDoseParameters | Source code |
| .CGNM_extractInitialConditionParameters | Source code |
| .CGNM_noQuotes | Source code |
| .CGNM_validate_doseTable | Source code |
| .CGNM_validate_initialConditionTable | Source code |
| .CGNM_validate_observedDataTable | Source code |
| .CGNM_validate_parameterInfoTable | Source code |
| .CGNM_validate_simulationTimepointsTable | Source code |
| .makeCodeForPosthoc_middleout | Source code |
| CGNM | Man page |
| CGNM-package | Man page |
| CGNM_input_test | Source code |
| CGNM_result-class | Man page |
| CGNR_ATAx_ATb | Source code |
| CGNR_ATAx_ATb_with_reg | Source code |
| CGNR_ATAx_ATb_with_regVec | Source code |
| CGNR_ATAx_ATb_with_reg_weight | Source code |
| CGNR_ATAx_ATb_with_weight | Source code |
| Cluster_Gauss_Newton_Bootstrap_method | Man page Source code |
| Cluster_Gauss_Newton_EBE_method | Man page Source code |
| Cluster_Gauss_Newton_method | Man page Source code |
| Cluster_Gauss_Newton_method_core | Source code |
| Residual_function_def | Source code |
| Residual_matrix_function | Source code |
| [[,CGNM_result-method | Man page |
| [[<-,CGNM_result-method | Man page |
| acceptedApproximateMinimizers | Man page Source code |
| acceptedIndices | Man page Source code |
| acceptedIndices_binary | Man page Source code |
| acceptedMaxSSR | Man page Source code |
| as_CGNM_result_S4 | Man page Source code |
| bestApproximateMinimizers | Man page Source code |
| capProportionalWeight | Source code |
| col_max | Source code |
| col_mean | Source code |
| col_median | Source code |
| col_min | Source code |
| col_normalize | Source code |
| col_quantile | Man page Source code Source code |
| col_sd | Source code |
| compare_profileLikelihood | Man page Source code |
| dot | Source code |
| elbow_index | Source code |
| generateCGNM_script | Man page Source code |
| main_iteration_version1 | Source code |
| main_iteration_version3 | Source code |
| main_iteration_version3_fast | Source code |
| main_iteration_version4 | Source code |
| makeCGNM_runCode | Source code |
| makeInitialClusterForPLrefinment | Source code |
| makeParaDistributionPlotDataFrame | Source code |
| makeSSRsurfaceDataset | Source code |
| make_ShinyCGNM_doseData | Man page Source code |
| make_ShinyCGNM_initialCondition | Man page Source code |
| make_ShinyCGNM_observationData | Man page Source code |
| make_ShinyCGNM_parameterInfo | Man page Source code |
| make_ShinyCGNM_simulationTimepoints | Man page Source code |
| matlabMedian | Source code |
| matlabRand | Source code |
| matlabSum | Source code |
| names,CGNM_result-method | Man page |
| optimal_kmeans | Source code |
| pasteWithCollapse_WithApprox80charLimits | Source code |
| plot_2DprofileLikelihood | Man page Source code |
| plot_Rank_SSR | Man page Source code |
| plot_SSR_parameterValue | Man page Source code |
| plot_SSRsurface | Man page Source code |
| plot_goodnessOfFit | Man page Source code |
| plot_paraDistribution_byHistogram | Man page Source code |
| plot_paraDistribution_byViolinPlots | Man page Source code |
| plot_parameterValue_scatterPlots | Man page Source code |
| plot_profileLikelihood | Man page Source code |
| plot_simulationMatrixWithCI | Man page Source code |
| plot_simulationWithCI | Man page Source code |
| prepSSRsurfaceData | Source code |
| puttogether_model_code | Source code |
| repmat | Source code |
| shinyCGNM | Man page Source code |
| simulation_code_text | Source code |
| suggestInitialLowerRange | Man page Source code |
| suggestInitialUpperRange | Man page Source code |
| table_parameterSummary | Man page Source code |
| table_profileLikelihoodConfidenceInterval | Man page Source code |
| topIndices | Man page Source code |
| tryCatch_nonlinearFunction | Source code |
