cnpexample: Example of a boundary positions table.

In CNprep: Pre-Process DNA Copy Number (CN) Data for Detection of CN Events

Example of a boundary positions table.

Description

A table of genomic positions for DNA copy-number changing events, collected from genomes of 1203 individuals using Representational Oligonucleotide Microarray Analysis (ROMA) platform.

Usage

data(cnpexample)

Format

A data frame with 19188 rows and 4 columns.

copy.num

a character vector indicating whether an event is a gain ("amp") or a loss ("del").

chrom

a numeric vector indicating which chromosome the event is in.

chrom.start

a numeric vector of event start positions.

chrom.end

a numeric vector of event start positions.

Source

Strong association of de novo copy number mutations with autism. Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J, Leotta A, Pai D, Zhang R, Lee YH, Hicks J, Spence SJ, Lee AT, Puura K, Lehtimaki T, Ledbetter D, Gregersen PK, Bregman J, Sutcliffe JS, Jobanputra V, Chung W, Warburton D, King MC, Skuse D, Geschwind DH, Gilliam TC, Ye K, Wigler M. Science. 2007 Apr 20;316(5823):445-9.

Examples

data(cnpexample)

CNprep documentation built on May 24, 2022, 5:05 p.m.