Man pages for COMBO
Correcting Misclassified Binary Outcomes in Association Studies
| check_and_fix_chains | Check Assumption and Fix Label Switching if Assumption is... |
| check_and_fix_chains_2stage | Check Assumption and Fix Label Switching if Assumption is... |
| COMBO_data | Generate Data to use in COMBO Functions |
| COMBO_data_2stage | Generate data to use in two-stage COMBO Functions |
| COMBO_EM | EM-Algorithm Estimation of the Binary Outcome... |
| COMBO_EM_2stage | EM-Algorithm Estimation of the Two-Stage Binary Outcome... |
| COMBO_EM_data | Test data for the COMBO_EM function |
| COMBO_MCMC | MCMC Estimation of the Binary Outcome Misclassification Model |
| COMBO_MCMC_2stage | MCMC Estimation of the Two-Stage Binary Outcome... |
| em_function | EM-Algorithm Function for Estimation of the Misclassification... |
| em_function_2stage | EM-Algorithm Function for Estimation of the Two-Stage... |
| expit | Expit function |
| jags_picker | Set up a Binary Outcome Misclassification 'jags.model' Object... |
| jags_picker_2stage | Set up a Two-Stage Binary Outcome Misclassification... |
| label_switch | Fix Label Switching in MCMC Results from a Binary Outcome... |
| label_switch_2stage | Fix Label Switching in MCMC Results from a Binary Outcome... |
| loglik | Expected Complete Data Log-Likelihood Function for Estimation... |
| loglik_2stage | Expected Complete Data Log-Likelihood Function for Estimation... |
| LSAC_data | Example data from The Law School Admissions Council's (LSAC)... |
| mean_pistarjj_compute | Compute the Mean Conditional Probability of Correct... |
| misclassification_prob | Compute Conditional Probability of Each Observed Outcome... |
| misclassification_prob2 | Compute Conditional Probability of Each Second-Stage Observed... |
| model_picker | Select a Binary Outcome Misclassification Model for a Given... |
| model_picker_2stage | Select a Two-Stage Binary Outcome Misclassification Model for... |
| naive_jags_picker | Set up a Naive Logistic Regression 'jags.model' Object for a... |
| naive_jags_picker_2stage | Set up a Naive Two-Stage Regression 'jags.model' Object for a... |
| naive_loglik_2stage | Observed Data Log-Likelihood Function for Estimation of the... |
| naive_model_picker | Select a Logisitic Regression Model for a Given Prior |
| naive_model_picker_2stage | Select a Naive Two-Stage Regression Model for a Given Prior |
| perfect_sensitivity_EM | EM-Algorithm Estimation of the Binary Outcome... |
| pi_compute | Compute Probability of Each True Outcome, for Every Subject |
| pistar_by_chain | Compute the Mean Conditional Probability of Correct... |
| pistar_by_chain_2stage | Compute the Mean Conditional Probability of Correct... |
| pistar_compute | Compute Conditional Probability of Each Observed Outcome... |
| pistar_compute_for_chains | Compute Conditional Probability of Each Observed Outcome... |
| pistar_compute_for_chains_2stage | Compute Conditional Probability of Each Observed Outcome... |
| pitilde_by_chain | Compute the Mean Conditional Probability of Second-Stage... |
| pitilde_compute | Compute Conditional Probability of Each Second-Stage Observed... |
| pitilde_compute_for_chains | Compute Conditional Probability of Each Observed Outcome... |
| q_beta_f | M-Step Expected Log-Likelihood with respect to Beta |
| q_delta_f | M-Step Expected Log-Likelihood with respect to Delta |
| q_gamma_f | M-Step Expected Log-Likelihood with respect to Gamma |
| sum_every_n | Sum Every "n"th Element |
| sum_every_n1 | Sum Every "n"th Element, then add 1 |
| true_classification_prob | Compute Probability of Each True Outcome, for Every Subject |
| VPRAI_synthetic_data | Synthetic example data of pretrial failure risk factors and... |
| w_j | Compute E-step for Binary Outcome Misclassification Model... |
| w_j_2stage | Compute E-step for Two-Stage Binary Outcome Misclassification... |
