CatDyn: Fishery Stock Assessment by Generalized Depletion Models
Version 1.1-0

Based on fishery Catch Dynamics instead of fish Population Dynamics (hence CatDyn) and using high-frequency or medium-frequency catch in biomass or numbers, fishing nominal effort, and mean fish body weight by time step, from one or two fishing fleets, estimate stock abundance, natural mortality rate, and fishing operational parameters. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions, for 77 types of models of increasing complexity, and 56 likelihood models for the data.

Browse man pages Browse package API and functions Browse package files

AuthorRuben H. Roa-Ureta
Date of publication2015-05-15 12:57:30
MaintainerRuben H. Roa-Ureta <ruben.roa.ureta@mail.com>
LicenseGPL (>= 2)
Version1.1-0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CatDyn")

Man pages

as.CatDynData: Data Object for the Estimation of Catch Dynamic Models
catdyn: Class Attribute of Numerically Fit CatDyn Model Objects
CatDynCor: Correlation Plot Among Parameter Estimates
CatDynData: Class Attribute of CatDyn Data Object
CatDynExp: Class Attribute of Exploratory Analysis Object
catdynexp_1: Exploratory Evaluation of Initial Values of CatDyn Models
CatDynFit: Fit CatDyn Models by Maximum Likelihood
CatDynMod: Class Attribute of Model Output Object
CatDyn-package: Fisheries Stock Assessment by Generalized Depletion (Catch...
CatDynPred: Predictions from a Generalized Depletion (Catch Dynamics)...
CatDynSum: Summary Table for Generalized Depletion (Catch Dynamics)...
deltamethod: First-order Taylor Series Expansion of Functions of Random...
gayhake: Industrial and Artisanal Catch and Effort Data from the...
lolgahi: Industrial Trawling Data from the Squid Fishery of the...
plot.CatDynData: Exploratory Analysis of Catch and Effort Fisheries Data
plot.CatDynExp: Exploratory Modeling of Fisheries with Catch Dynamic Models
plot.CatDynMod: Examination of Results from Fitting Catch Dynamic Models
twelver: Sport Fishing for Eel Juveniles in Taiwan

Functions

CDMN0P Source code
CDMN0P0P Source code
CDMN0P1P Source code
CDMN0P2P Source code
CDMN0P3P Source code
CDMN0P4P Source code
CDMN0P5P Source code
CDMN10P Source code
CDMN10P10P Source code
CDMN11P Source code
CDMN11P11P Source code
CDMN12P Source code
CDMN12P12P Source code
CDMN13P Source code
CDMN13P13P Source code
CDMN14P Source code
CDMN14P14P Source code
CDMN15P Source code
CDMN15P15P Source code
CDMN16P Source code
CDMN16P16P Source code
CDMN17P Source code
CDMN17P17P Source code
CDMN18P Source code
CDMN18P18P Source code
CDMN19P Source code
CDMN19P19P Source code
CDMN1P Source code
CDMN1P1P Source code
CDMN1P2P Source code
CDMN1P3P Source code
CDMN1P4P Source code
CDMN1P5P Source code
CDMN20P Source code
CDMN20P20P Source code
CDMN2P Source code
CDMN2P2P Source code
CDMN2P3P Source code
CDMN2P4P Source code
CDMN2P5P Source code
CDMN3P Source code
CDMN3P3P Source code
CDMN3P4P Source code
CDMN3P5P Source code
CDMN4P Source code
CDMN4P4P Source code
CDMN4P5P Source code
CDMN5P Source code
CDMN5P5P Source code
CDMN6P Source code
CDMN6P6P Source code
CDMN7P Source code
CDMN7P7P Source code
CDMN8P Source code
CDMN8P8P Source code
CDMN9P Source code
CDMN9P9P Source code
CDMNT10P Source code
CDMNT11P Source code
CDMNT12P Source code
CDMNT13P Source code
CDMNT14P Source code
CDMNT15P Source code
CDMNT16P Source code
CDMNT17P Source code
CDMNT18P Source code
CDMNT19P Source code
CDMNT1P Source code
CDMNT20P Source code
CDMNT2P Source code
CDMNT3P Source code
CDMNT4P Source code
CDMNT5P Source code
CDMNT6P Source code
CDMNT7P Source code
CDMNT8P Source code
CDMNT9P Source code
CatDyn-package Man page
CatDynCor Man page Source code
CatDynData Man page Source code
CatDynExp Man page Source code
CatDynExp1F.Res Source code
CatDynExp2F.Res Source code
CatDynFit Man page Source code
CatDynLik1F Source code
CatDynLik2F Source code
CatDynMod Man page Source code
CatDynPred Man page Source code
CatDynSum Man page Source code
as.CatDynData Man page Source code
catdyn Man page Source code
catdynexp Man page Source code
deltamethod Man page Source code
gayhake Man page
lolgahi Man page
onAttach Source code
plot.CatDynData Man page Source code
plot.CatDynExp Man page Source code
plot.CatDynMod Man page Source code
psi.nb2 Source code
twelver Man page

Files

NAMESPACE
data
data/twelver.rda
data/lolgahi.rda
data/gayhake.rda
R
R/plot.CatDynMod.R
R/CatDynMod.R
R/catdyn.R
R/CatDynExp.R
R/CatDynCor.R
R/catdynexp_1.R
R/CatDynPred.R
R/CatDyn-internal.R
R/CatDynData.R
R/deltamethod.R
R/CatDynSum.R
R/as.CatDynData.R
R/CatDynFit.R
R/plot.CatDynData.R
R/plot.CatDynExp.R
MD5
DESCRIPTION
man
man/CatDynSum.Rd
man/plot.CatDynData.Rd
man/lolgahi.Rd
man/plot.CatDynMod.Rd
man/twelver.Rd
man/catdynexp_1.Rd
man/CatDynFit.Rd
man/CatDynExp.Rd
man/gayhake.Rd
man/CatDynMod.Rd
man/deltamethod.Rd
man/CatDynPred.Rd
man/CatDynCor.Rd
man/CatDyn-package.Rd
man/CatDynData.Rd
man/catdyn.Rd
man/as.CatDynData.Rd
man/plot.CatDynExp.Rd
CatDyn documentation built on May 19, 2017, 6:52 p.m.