Based on fishery Catch Dynamics instead of fish Population Dynamics (hence CatDyn) and using high-frequency or medium-frequency catch in biomass or numbers, fishing nominal effort, and mean fish body weight by time step, from one or two fishing fleets, estimate stock abundance, natural mortality rate, and fishing operational parameters. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions, for 77 types of models of increasing complexity, and 56 likelihood models for the data.

Author | Ruben H. Roa-Ureta |

Date of publication | 2015-05-15 12:57:30 |

Maintainer | Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com> |

License | GPL (>= 2) |

Version | 1.1-0 |

**as.CatDynData:** Data Object for the Estimation of Catch Dynamic Models

**catdyn:** Class Attribute of Numerically Fit CatDyn Model Objects

**CatDynCor:** Correlation Plot Among Parameter Estimates

**CatDynData:** Class Attribute of CatDyn Data Object

**CatDynExp:** Class Attribute of Exploratory Analysis Object

**catdynexp_1:** Exploratory Evaluation of Initial Values of CatDyn Models

**CatDynFit:** Fit CatDyn Models by Maximum Likelihood

**CatDynMod:** Class Attribute of Model Output Object

**CatDyn-package:** Fisheries Stock Assessment by Generalized Depletion (Catch...

**CatDynPred:** Predictions from a Generalized Depletion (Catch Dynamics)...

**CatDynSum:** Summary Table for Generalized Depletion (Catch Dynamics)...

**deltamethod:** First-order Taylor Series Expansion of Functions of Random...

**gayhake:** Industrial and Artisanal Catch and Effort Data from the...

**lolgahi:** Industrial Trawling Data from the Squid Fishery of the...

**plot.CatDynData:** Exploratory Analysis of Catch and Effort Fisheries Data

**plot.CatDynExp:** Exploratory Modeling of Fisheries with Catch Dynamic Models

**plot.CatDynMod:** Examination of Results from Fitting Catch Dynamic Models

**twelver:** Sport Fishing for Eel Juveniles in Taiwan

CatDyn

CatDyn/NAMESPACE

CatDyn/data

CatDyn/data/twelver.rda

CatDyn/data/lolgahi.rda

CatDyn/data/gayhake.rda

CatDyn/R

CatDyn/R/plot.CatDynMod.R
CatDyn/R/CatDynMod.R
CatDyn/R/catdyn.R
CatDyn/R/CatDynExp.R
CatDyn/R/CatDynCor.R
CatDyn/R/catdynexp_1.R
CatDyn/R/CatDynPred.R
CatDyn/R/CatDyn-internal.R
CatDyn/R/CatDynData.R
CatDyn/R/deltamethod.R
CatDyn/R/CatDynSum.R
CatDyn/R/as.CatDynData.R
CatDyn/R/CatDynFit.R
CatDyn/R/plot.CatDynData.R
CatDyn/R/plot.CatDynExp.R
CatDyn/MD5

CatDyn/DESCRIPTION

CatDyn/man

CatDyn/man/CatDynSum.Rd
CatDyn/man/plot.CatDynData.Rd
CatDyn/man/lolgahi.Rd
CatDyn/man/plot.CatDynMod.Rd
CatDyn/man/twelver.Rd
CatDyn/man/catdynexp_1.Rd
CatDyn/man/CatDynFit.Rd
CatDyn/man/CatDynExp.Rd
CatDyn/man/gayhake.Rd
CatDyn/man/CatDynMod.Rd
CatDyn/man/deltamethod.Rd
CatDyn/man/CatDynPred.Rd
CatDyn/man/CatDynCor.Rd
CatDyn/man/CatDyn-package.Rd
CatDyn/man/CatDynData.Rd
CatDyn/man/catdyn.Rd
CatDyn/man/as.CatDynData.Rd
CatDyn/man/plot.CatDynExp.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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