API for CePa
Centrality-Based Pathway Enrichment
| Global functions | |
|---|---|
| .control | Source code |
| .factor | Source code |
| .permutate | Source code |
| .treatment | Source code |
| CePa-package | Man page |
| PID.db | Man page |
| arrow.coor | Source code |
| centrality | Source code |
| cepa | Man page Source code |
| cepa.all | Man page Source code |
| cepa.all.parallel | Man page Source code |
| cepa.all.parallel.by.snow | Source code |
| cepa.ora | Man page Source code |
| cepa.ora.all | Man page Source code |
| cepa.univariate | Man page Source code |
| cepa.univariate.all | Man page Source code |
| combine.cepa.all | Source code |
| divide | Source code |
| find.nlevelFun | Source code |
| find.plevelFun | Source code |
| find_code | Source code |
| gene.list | Man page |
| generate.pathway | Man page Source code |
| get.cepa | Man page Source code |
| get_color | Source code |
| is.gsa | Source code |
| is.ora | Source code |
| jitt | Source code |
| node.score | Source code |
| nodeLevelFun.tvalue | Source code |
| nodeLevelFun.tvalue_abs | Source code |
| nodeLevelFun.tvalue_sq | Source code |
| p.heatmap | Source code |
| p.table | Man page Source code |
| pathway.nodes | Man page Source code |
| pathwayLevelFun.max | Source code |
| pathwayLevelFun.mean | Source code |
| pathwayLevelFun.median | Source code |
| pathwayLevelFun.min | Source code |
| pathwayLevelFun.rank | Source code |
| pathwayLevelFun.sum | Source code |
| plot.cepa | Man page Source code |
| plot.cepa.all | Man page Source code |
| plot.pathway.catalogue | Man page Source code |
| plotByRGraphviz | Source code |
| plotGraph | Man page Source code |
| plotNull | Man page Source code |
| plot_igraph2 | Source code |
| print.cepa | Man page Source code |
| print.cepa.all | Man page Source code |
| print.pathway.catalogue | Man page Source code |
| radiality | Man page Source code |
| reach | Man page Source code |
| read.cls | Man page |
| read.gct | Man page |
| reedge | Source code |
| report | Man page Source code |
| sampleLabel | Man page |
| set.pathway.catalogue | Man page Source code |
| spread | Man page Source code |
| table.content | Source code |
| table.head | Source code |
| template | Source code |
