plot.pathway.catalogue: plot pathway.catalogue object
In CePa: Centrality-Based Pathway Enrichment
plot.pathway.catalogue R Documentation
plot pathway.catalogue object
Description
plot pathway.catalogue object
Usage
## S3 method for class 'pathway.catalogue'
plot(x, ...)
Arguments
x
a pathway.catalogue object
...
other arguments
Details
There are three fugures: A) Distribution of the number of member genes in each node;
B) Distribution of the number of nodes in which a single gene resides; C) Relationship
between node count and gene count in biological pathways.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
See Also
set.pathway.catalogue
Examples
data(PID.db)
NCI = PID.db$NCI
plot(NCI)
CePa documentation built on June 12, 2022, 1:05 a.m.
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| plot.pathway.catalogue | R Documentation |
plot pathway.catalogue object
Description
plot pathway.catalogue object
Usage
## S3 method for class 'pathway.catalogue' plot(x, ...)
Arguments
x |
a |
... |
other arguments |
Details
There are three fugures: A) Distribution of the number of member genes in each node; B) Distribution of the number of nodes in which a single gene resides; C) Relationship between node count and gene count in biological pathways.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
See Also
set.pathway.catalogue
Examples
data(PID.db) NCI = PID.db$NCI plot(NCI)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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