ClusTCR_Large: Creates ClusTCR matrix This function identifies similar CDR3...
In ClusTCR2: Identifying Similar T Cell Receptor Hyper-Variable Sequences with 'ClusTCR2'
ClusTCR_Large R Documentation
Creates ClusTCR matrix
This function identifies similar CDR3 amino acid sequences based on the same length and V_gene
Description
Creates ClusTCR matrix
This function identifies similar CDR3 amino acid sequences based on the same length and V_gene
Usage
ClusTCR_Large(my_file, allele = NULL, v_gene = "v_call")
Arguments
my_file
uploaded file with junction_aa (CD3 sequences), variable gene.
allele
The allele, if present as *00 will be removed if the user requires it.
v_gene
Variable gene column name
Value
X by Y matrix of structurally related CDR3 sequences.
ClusTCR2 documentation built on May 29, 2024, 9:32 a.m.
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| ClusTCR_Large | R Documentation |
Creates ClusTCR matrix This function identifies similar CDR3 amino acid sequences based on the same length and V_gene
Description
Creates ClusTCR matrix This function identifies similar CDR3 amino acid sequences based on the same length and V_gene
Usage
ClusTCR_Large(my_file, allele = NULL, v_gene = "v_call")
Arguments
my_file |
uploaded file with junction_aa (CD3 sequences), variable gene. |
allele |
The allele, if present as *00 will be removed if the user requires it. |
v_gene |
Variable gene column name |
Value
X by Y matrix of structurally related CDR3 sequences.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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