Motif_from_cluster_file: Code for plotting the Motif based on a specific CDR3 length...

In ClusTCR2: Identifying Similar T Cell Receptor Hyper-Variable Sequences with 'ClusTCR2'

Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).

Description

Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).

Usage

Motif_from_cluster_file(
  ClusTCR,
  Clust_selected = NULL,
  selected_cluster_column = "Clust_size_order"
)

Arguments

ClusTCR	Cluster file produced from mcl_cluster.
Clust_selected	Select which cluster to review.
selected_cluster_column	Select the column "Clust_size_order" of the cluster ordered.

Value

A ggplot object representing the motif.

ClusTCR2 documentation built on May 29, 2024, 9:32 a.m.