motif_plot_large: Code for plotting the Motif based on a specific CDR3 length...

In ClusTCR2: Identifying Similar T Cell Receptor Hyper-Variable Sequences with 'ClusTCR2'

Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).

Description

Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).

Usage

motif_plot_large(
  ClusTCRFile_large,
  Clust_column_name = "Clust_size_order",
  Clust_selected = NULL
)

Arguments

ClusTCRFile_large	Matrix file produced from mcl_cluster_large.
Clust_column_name	Name of clustering column from mcl_cluster file e.g. cluster.
Clust_selected	Select which cluster to display. Only one at a time.

Value

A ggplot object representing the motif.

ClusTCR2 documentation built on May 29, 2024, 9:32 a.m.