manhattanData: Prepare data for Manhattan plot.
In CollapsABEL: Generalized CDH (GCDH) Analysis
Description
Usage
Arguments
Value
Author(s)
Description
Prepare data for Manhattan plot.
Usage
1
manhattanData(chr, bp, p, snp, color_vec = NULL, sort_chr_bp = TRUE)
Arguments
chr
integer. Chromosome vector.
bp
integer. Position vector.
p
numeric. P-value vector.
snp
character. SNP name vector.
color_vec
character/factor. Color vector. Doesn't have to be color names, any categorical variable will be fine.
sort_chr_bp
logical. Whether to sort the whole data frame by CHR and BP before return.
Value
A list with the following members (1) A data frame with columns including CHR, SNP, BP, P, etc. (2) Total number of SNPs. (3) A vector of unique chromosomes.
Author(s)
Kaiyin Zhong
CollapsABEL documentation built on May 1, 2019, 7:28 p.m.
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Description Usage Arguments Value Author(s)
Description
Prepare data for Manhattan plot.
Usage
1 | manhattanData(chr, bp, p, snp, color_vec = NULL, sort_chr_bp = TRUE)
|
Arguments
chr |
integer. Chromosome vector. |
bp |
integer. Position vector. |
p |
numeric. P-value vector. |
snp |
character. SNP name vector. |
color_vec |
character/factor. Color vector. Doesn't have to be color names, any categorical variable will be fine. |
sort_chr_bp |
logical. Whether to sort the whole data frame by CHR and BP before return. |
Value
A list with the following members (1) A data frame with columns including CHR, SNP, BP, P, etc. (2) Total number of SNPs. (3) A vector of unique chromosomes.
Author(s)
Kaiyin Zhong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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