API for CollapsABEL
Generalized CDH (GCDH) Analysis

Global functions
.FilePath Man page
.PlGwasC Man page
.PlInfoC Man page
.RbedInfoC Man page
.ReadInfo Man page
CollapsABEL Man page
CollapsABEL-package Man page
FilePath-class Man page
PlGwasC-class Man page
PlInfoC-class Man page
RbedInfoC-class Man page
ReadInfo-class Man page
\%||\% Man page
alphaNumeric Man page
appChr Source code
asBigMatrix Man page
asBigMatrix,data.frame,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-metho Man page
asBigMatrix,matrix,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method Man page
asBigMatrix,vector,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method Man page
assocFilter Man page Source code
baseName Man page
baseName,FilePath-method Man page
bedSizeCorrect Man page Source code
bedcollr Man page Source code
bimCorrectTypes Man page Source code
bin2DescFilename Man page Source code
binPhe Man page Source code
bmAddCol Man page Source code
bmAttachBin Man page Source code
bmBinFilename Source code
bmConvertFun Man page Source code
bmCreate Source code
bmDescFilename Source code
bmFilename Man page Source code
bmFilepath Man page Source code
bytesSnp Man page Source code
chExt Man page Source code
chGwasTag Source code
changeByMap Man page Source code
charify Man page Source code
checkFileExist Man page Source code
cmh Man page Source code
colClasses Man page Source code
colCors Man page Source code
collClear Man page Source code
collapsabel Man page
collapsabel-package Man page
collapse Man page Source code
collapseMat Man page Source code
collenv Man page
connectSnpPair Man page Source code
contrastData Man page Source code
contrastPlot Man page Source code
correctDesc Man page Source code
correctTypes Man page Source code
correctTypes_methods Man page
covarNames Man page Source code
cytoband Man page Source code
datToVec Man page Source code
dbUpToDate Source code
desc2BinFilename Man page Source code
dir.create2 Man page Source code
dir2Tag Source code
dirName Man page
dirName,FilePath-method Man page
dummyPhe Source code
dummyTypeI Source code
eprint Man page Source code
evalFile Man page Source code
expand.grid.rev Source code
famCorrectTypes Man page Source code
fidIid Man page Source code
file.create2 Man page Source code
filePath Man page Source code
fileSize Man page Source code
frqUpToDate Source code
gcdhBmCreate Man page Source code
gcdhDir Man page Source code
gcdhPower Man page Source code
gcdhRegion Man page Source code
gcdhReport Man page Source code
getHaplo Man page Source code
getHaplos Man page Source code
getOrElse-operator Man page
getQuery Man page Source code
getr2 Man page Source code
glm2 Man page Source code
glmIter Man page Source code
gwasDat Man page Source code
gwasDir Man page Source code
gwasLog Man page Source code
gwasOut Man page Source code
gwasOutStem Man page Source code
gwasR Man page Source code
gwasRDS Man page Source code
haplo.g Source code
haploFormat Source code
haploString Source code
head2 Man page Source code
headPhe Man page Source code
infoFactory Source code
isBinary Man page Source code
isS4Class Man page Source code
isSQLite3 Man page Source code
isSetup Man page Source code
isSetupRbed Man page Source code
lagDistance Man page Source code
lenCheck Man page Source code
listEqual Man page Source code
listGwasTags Man page Source code
listTags Man page
loadGwas Man page Source code
mLogP Source code
makePhe Man page Source code
manhattanData Man page Source code
manhattanPlot Man page Source code
minimalPIndices Source code
nIndivApprPl Man page Source code
nIndivPl Man page Source code
nSnpPl Man page Source code
nonExistentFiles Man page Source code
numVectorSQLRepr Man page Source code
onLoad Source code
permutePhe Man page Source code
plGwas Man page
plGwas,PlGwasC,character,character,character,character,logical,l Man page
plGwas,RbedInfoC,character,character,character,character,logical Man page Man page
plGwas,RbedInfoC,character,character,character,character,missing Man page Man page
plGwas,RbedInfoC,character,character,missing,character,missing,m Man page
plInfo Man page
plInfo,PlInfoC,character,logical-method Man page
plInfo,PlInfoC,character,missing-method Man page
plInfo,missing,character,logical-method Man page
plInfo,missing,character,missing-method Man page
plTrim Man page Source code
plinkTrio Source code
plinkr Man page Source code
qq Man page Source code
qq2 Man page Source code
qqmulti Man page Source code
randNormDat Man page Source code
randomString Man page Source code
randomStrings Man page Source code
rbedInfo Man page Source code
read.phe.table Man page Source code
readAssoc Man page Source code
readBed Man page
readBed,RbedInfoC,ANY,logical,logical-method Man page
readBed,RbedInfoC,ANY,logical,missing-method Man page
readBed,RbedInfoC,ANY,missing,logical-method Man page
readBed,RbedInfoC,ANY,missing,missing-method Man page
readBed,RbedInfoC,missing,logical,logical-method Man page
readBed,RbedInfoC,missing,logical,missing-method Man page
readBed,RbedInfoC,missing,missing,logical-method Man page
readBed,RbedInfoC,missing,missing,missing-method Man page
readBim Man page
readBmBin Man page Source code
readDesc Man page Source code
readFactory Source code
readFam Man page
readFunFactory Man page Source code
readGwasOut Man page Source code
readInfo Man page
readInfo,character,character-method Man page
readInfo,character,missing-method Man page
readLiteral Man page Source code
readLogistic Man page Source code
readPhe Man page Source code
readPlinkOut Man page Source code
readQassoc Man page Source code
realBedSize Man page Source code
removeAllTags Source code
removeTag Man page Source code
reprClasses Man page Source code
rmFilesByStem Man page Source code
rmPlinkFiles Source code
runGcdh Man page Source code
runGwas Man page Source code
runTypeI Man page Source code
running.bool Source code
running.bools Source code
saveDesc Man page Source code
scaleByChr Source code
secondSnpIndices Source code
secondSnpIndices1 Source code
sendQuery Man page Source code
setOptModel Man page Source code
setup Man page Source code
setupRbed Man page Source code
shiftBed Man page Source code
shiftedStem Man page Source code
slurp Man page Source code
snpPos Man page Source code
snpRowId Man page Source code
spit Man page Source code
sqliteFileGcdh Source code
sqliteFilePl Man page Source code
stopFormat Man page Source code
strConcat Man page Source code
strVectorRepr Man page Source code
strVectorSQLRepr Man page Source code
systemFormat Man page Source code
tag2Dir Source code
tag2RDS Source code
tag2RDSPath Source code
tail2 Man page Source code
theoBedSize Man page Source code
type2Bytes Source code
validPhe Man page Source code
validatedIdx Source code
write.phe.table Man page Source code
CollapsABEL documentation built on May 29, 2017, 9:43 a.m.