Files in CollapsABEL
Generalized CDH (GCDH) Analysis
MD5
NEWS
DESCRIPTION
NAMESPACE
R/0_utils.R
R/0_strConcat.R
R/0_loadJava.R
R/0_bedcollr.R
R/0_readFactory.R
R/0_cytoband.R
R/0_glm2.R
R/0_nonExistentFiles.R
R/0_filePath.R
R/0_head2.R
R/0_sqlUtils.R
R/1_rbedInfo.R
R/0_lenCheck.R
R/snpPos.R
R/sysdata.rda
R/CollapsABEL.R
R/0__globalVars.R
R/0_plinkr.R
R/1_bedinfo.R
R/3_permute.R
R/0_manhattan.R
R/4_haplo.R
R/1_bigmatrixUtils.R
R/2_plGwas.R
man/qqmulti.Rd
man/numVectorSQLRepr.Rd
man/correctDesc.Rd
man/fileSize.Rd
man/lenCheck.Rd
man/randomStrings.Rd
man/isSQLite3.Rd
man/colClasses.Rd
man/plTrim.Rd
man/bytesSnp.Rd
man/gcdhPower.Rd
man/readGwasOut.Rd
man/readFam.Rd
man/datToVec.Rd
man/assocFilter.Rd
man/readBmBin.Rd
man/plInfo.Rd
man/readFunFactory.Rd
man/bmFilename.Rd
man/setOptModel.Rd
man/baseName.Rd
man/realBedSize.Rd
man/dirName.Rd
man/getr2.Rd
man/readLiteral.Rd
man/theoBedSize.Rd
man/getQuery.Rd
man/systemFormat.Rd
man/readPhe.Rd
man/plGwas.Rd
man/chExt.Rd
man/runGwas.Rd
man/nSnpPl.Rd
man/stopFormat.Rd
man/ReadInfo-class.Rd
man/headPhe.Rd
man/nonExistentFiles.Rd
man/lagDistance.Rd
man/collenv.Rd
man/correctTypes_methods.Rd
man/listGwasTags.Rd
man/gcdhBmCreate.Rd
man/manhattanPlot.Rd
man/getOrElse-operator.Rd
man/listEqual.Rd
man/write.phe.table.Rd
man/eprint.Rd
man/randNormDat.Rd
man/reprClasses.Rd
man/nIndivPl.Rd
man/read.phe.table.Rd
man/bmAttachBin.Rd
man/runGcdh.Rd
man/gwasDat.Rd
man/bin2DescFilename.Rd
man/strVectorRepr.Rd
man/fidIid.Rd
man/gcdhDir.Rd
man/glmIter.Rd
man/charify.Rd
man/readAssoc.Rd
man/bmAddCol.Rd
man/loadGwas.Rd
man/bimCorrectTypes.Rd
man/readBim.Rd
man/checkFileExist.Rd
man/collapse.Rd
man/cytoband.Rd
man/collClear.Rd
man/getHaplo.Rd
man/CollapsABEL.Rd
man/snpRowId.Rd
man/shiftBed.Rd
man/gwasDir.Rd
man/getHaplos.Rd
man/gwasRDS.Rd
man/isSetupRbed.Rd
man/readQassoc.Rd
man/gwasOut.Rd
man/alphaNumeric.Rd
man/makePhe.Rd
man/strConcat.Rd
man/gwasR.Rd
man/isSetup.Rd
man/rmFilesByStem.Rd
man/readBed.Rd
man/covarNames.Rd
man/head2.Rd
man/bmConvertFun.Rd
man/permutePhe.Rd
man/PlInfoC-class.Rd
man/bedcollr.Rd
man/sendQuery.Rd
man/rbedInfo.Rd
man/readInfo.Rd
man/slurp.Rd
man/famCorrectTypes.Rd
man/glm2.Rd
man/gwasOutStem.Rd
man/bedSizeCorrect.Rd
man/dir.create2.Rd
man/manhattanData.Rd
man/removeTag.Rd
man/spit.Rd
man/connectSnpPair.Rd
man/bmFilepath.Rd
man/gcdhRegion.Rd
man/sqliteFilePl.Rd
man/shiftedStem.Rd
man/readLogistic.Rd
man/validPhe.Rd
man/binPhe.Rd
man/readPlinkOut.Rd
man/cmh.Rd
man/file.create2.Rd
man/strVectorSQLRepr.Rd
man/desc2BinFilename.Rd
man/PlGwasC-class.Rd
man/readDesc.Rd
man/plinkr.Rd
man/FilePath-class.Rd
man/runTypeI.Rd
man/filePath.Rd
man/setupRbed.Rd
man/qq2.Rd
man/gwasLog.Rd
man/changeByMap.Rd
man/nIndivApprPl.Rd
man/colCors.Rd
man/randomString.Rd
man/isS4Class.Rd
man/RbedInfoC-class.Rd
man/asBigMatrix.Rd
man/contrastPlot.Rd
man/contrastData.Rd
man/collapseMat.Rd
man/saveDesc.Rd
man/isBinary.Rd
man/evalFile.Rd
man/qq.Rd
man/setup.Rd
man/gcdhReport.Rd
man/snpPos.Rd
