plInfo: Constructor for PlInfoC class

In CollapsABEL: Generalized CDH (GCDH) Analysis

Description

Populates an PlInfoC object from a given plink bed filename stem (i.e. exclude extension name)

Usage

plInfo(pl_info, bedstem, db_setup)

## S4 method for signature 'PlInfoC,character,logical'
plInfo(pl_info, bedstem, db_setup)

## S4 method for signature 'PlInfoC,character,missing'
plInfo(pl_info, bedstem, db_setup)

## S4 method for signature 'missing,character,logical'
plInfo(pl_info, bedstem, db_setup)

## S4 method for signature 'missing,character,missing'
plInfo(pl_info, bedstem, db_setup)

Arguments

pl_info	a PlInfoC object, possibly empty.
bedstem	path of bed file excluding extension name
db_setup	logical. Whether to setup SQLite database for .bim, .fam and .frq files.

Value

a PlInfoC object

Author(s)

Kaiyin Zhong, Fan Liu

Examples

## Not run: 
		pl_info = plInfo(.PlInfoC(), "mmp13", db_setup = TRUE)
		isSetup(pl_info)
		bim_ff = getQuery(sqliteFilePl(pl_info), "select * from bim")
		fam_ff = getQuery(sqliteFilePl(pl_info), "select * from fam")
		frq_ff = getQuery(sqliteFilePl(pl_info), "select * from frq")

## End(Not run)

CollapsABEL documentation built on May 1, 2019, 7:28 p.m.