clInitializeTernaryQuarts: Initialize ternary plots for quartet plotting

In CongreveLamsdell2016: Distance Metrics for Trees Generated by Congreve and Lamsdell

Initialize ternary plots for quartet plotting

Description

Sets up a blank ternary plot ready for analytical results to be added.

Usage

clInitializeTernaryQuarts(
  zoom = 1,
  padding = 0.1,
  gridLines = 10,
  fontSize = 1,
  gridCol = "#DBDBDB",
  backgroundCol = "#FDFDFE",
  xLim = c(0, 1/zoom) - 0.01,
  yLim = c(0.5 - (1/zoom), 0.5),
  isometric = TRUE
)

clInitializeTernarySplits(
  fontSize = 1,
  xLim = NULL,
  yLim = NULL,
  gridCol = "#DBDBDB",
  backgroundCol = "#FDFDFE",
  padding = 0.1,
  isometric = TRUE
)

Arguments

zoom	Level of magnification (times), used to adjust ticks and scale.
padding	Padding, passed to TernaryPlot.
gridLines	Number of grid lines, passed to TernaryPlot as grid.lines.
fontSize	Font size, passed to TernaryPlot as lab.cex.
gridCol	Colour, passed to TernaryPlot as grid.col.
backgroundCol	Background colour, passed to TernaryPlot as col.
xLim, yLim	x and y limits, passed to TernaryPlot as xlim, ylim.
isometric	Logical specifying whether plot should be isometric, passed to TernaryPlot as isometric.

Functions

• clInitializeTernarySplits(): Initialize ternary plots for partition plotting.

CongreveLamsdell2016 documentation built on May 29, 2024, 2:52 a.m.