clPhyDat: 100 simulated data matrices

In CongreveLamsdell2016: Distance Metrics for Trees Generated by Congreve and Lamsdell

Description

Contains the 100 simulated matrices generated by Congreve & Lamsdell (2016) using a heterogeneous Markov-k model, generated from the clReferenceTree topology, with all branches sharing an equal length.

Usage

clPhyDat

clMatrices

Format

• clPhyDat: A list with 100 entries, each comprising a phyDat object of 55 characters for 22 taxa.

• clMatrices: A list with 100 entries, each comprising a list of character tokens for each simulated character, as read from raw nexus files using ape::read.nexus.data. The four dummy 'characters' have been removed.

Source

http://datadryad.org/resource/doi:10.5061/dryad.7dq0j

References

• Congreve, C. R. & Lamsdell, J. C. (2016). Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Palaeontology 59(3), 447–465. doi: 10.1111/pala.12236.

• Congreve, C. R. & Lamsdell, J. C. (2016). Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Dryad Digital Repository. doi: 10.5061/dryad.7dq0j.

CongreveLamsdell2016 documentation built on Jan. 7, 2020, 5:07 p.m.