CpGassoc: Association Between Methylation and a Phenotype of Interest
Version 2.60

Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.

Package details

AuthorBarfield, R., Conneely, K., Kilaru,V
Date of publication2017-05-30 22:23:09 UTC
MaintainerR Barfield <[email protected]>
LicenseGPL (>= 2)
Version2.60
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("CpGassoc")

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CpGassoc documentation built on May 31, 2017, 5:16 a.m.