Sample.data: Sample data from 'CpGassoc'

In CpGassoc: Association Between Methylation and a Phenotype of Interest

Description

• samplecpgMatrix containing sample (fake) methylation data for 258 individuals over 1228 CpG sites

• samplephenoMatrix with phenotype info for the 258 individuals

• annotationMatrix with annotation information for the 1228 CpG sites

Usage

data(samplecpg)

Format

• samplecpgMatrix, dimensions 1228 x 258

• samplephenoMatrix, dimensions 258 x 6. Phenotype info on "Dose", "SBP", "Distance", "weight", "Disease", and "chip"

• annotationMatrix, dimensions 1228 x 3. Header names are "TargetID", "CHR", and "MAPINFO"

See Also

cpg.perm cpg.assoc scatterplot manhattan plot.cpg.perm

Examples

##See help pages for other functions for usage of these datasets

Example output

Loading required package: nlme

CpGassoc documentation built on May 1, 2019, 8:24 p.m.