Description Usage Format Source References Examples
This dataset is list comprised of data frames corresponding to chromosomes 1 to 22. Each data frame has information on physical and genetic map positions for a collection of markers on the corresponding chromosome.
1 | data("RutgersMapB36")
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The format of the dataset is a list of 22 elements. Each element is a data frame corresponding to a chromosome with nine columns:
[,1] | Markers_name | factor | marker name |
[,2] | Type | factor | marker type |
[,3] | Primer.SNP_ref_name | factor | primer or SNP name |
[,4] | Informative_meioses | integer | number of informative meioses |
[,5] | Heterozygosity | numeric | marker heterozygosity |
[,6] | Build36_map_physical_position | integer | physical position (in base pairs) on build 36 of the human genome |
[,7] | Sex.averaged_map_position | numeric | sex-averaged map position |
[,8] | Female_map_position | numeric | female map position |
[,9] | Male_map_position | numeric | male map position |
The data were obtained from the Rutgers map (see http://compgen.rutgers.edu/download_maps.shtml)
A second-generation combined linkage physical map of the human genome. Matise TC, Chen F, Chen W, De La Vega FM, Hansen M, He C, Hyland FC, Kennedy GC, Kong X, Murray SS, Ziegle JS, Stewart WC, Buyske S. Genome Res. 2007 Dec;17(12):1783-6. Epub 2007 Nov 7.
1 | data("RutgersMapB36")
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