RutgersMapB36: physical and genetic map positions for a collection of...

In CrypticIBDcheck: Identifying Cryptic Relatedness in Genetic Association Studies

Description

This dataset is list comprised of data frames corresponding to chromosomes 1 to 22. Each data frame has information on physical and genetic map positions for a collection of markers on the corresponding chromosome.

Usage

data("RutgersMapB36")

Format

The format of the dataset is a list of 22 elements. Each element is a data frame corresponding to a chromosome with nine columns:

[,1]	Markers_name	factor	marker name
[,2]	Type	factor	marker type
[,3]	Primer.SNP_ref_name	factor	primer or SNP name
[,4]	Informative_meioses	integer	number of informative meioses
[,5]	Heterozygosity	numeric	marker heterozygosity
[,6]	Build36_map_physical_position	integer	physical position (in base pairs) on build 36 of the human genome
[,7]	Sex.averaged_map_position	numeric	sex-averaged map position
[,8]	Female_map_position	numeric	female map position
[,9]	Male_map_position	numeric	male map position

Source

The data were obtained from the Rutgers map (see http://compgen.rutgers.edu/download_maps.shtml)

References

A second-generation combined linkage physical map of the human genome. Matise TC, Chen F, Chen W, De La Vega FM, Hansen M, He C, Hyland FC, Kennedy GC, Kong X, Murray SS, Ziegle JS, Stewart WC, Buyske S. Genome Res. 2007 Dec;17(12):1783-6. Epub 2007 Nov 7.

Examples

data("RutgersMapB36")

CrypticIBDcheck documentation built on May 2, 2019, 7:30 a.m.