R/data.R

In CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data

#' Mouse bone marrow scRNAseq example data
#' @format \link[Matrix]{dgCMatrix-class} object
#' @source https://www.nature.com/articles/s41467-023-38034-2
#' @references Matsushita, Y., Liu, J., Chu, A.K.Y. et al. Bone marrow endosteal
#' stem cells dictate active osteogenesis and aggressive tumorigenesis. Nat
#' Commun 14, 2383 (2023).
"rnaRaw"

#' Major cell type annotation of the example mouse bone marrow data
#' @format \code{factor} object
#' @source https://www.nature.com/articles/s41467-023-38034-2
#' @references Matsushita, Y., Liu, J., Chu, A.K.Y. et al. Bone marrow endosteal
#' stem cells dictate active osteogenesis and aggressive tumorigenesis. Nat
#' Commun 14, 2383 (2023).
"rnaCluster"

#' Velocity graph of the example mouse bone marrow data
#' @format \link[Matrix]{dgCMatrix-class} object
#' @source https://www.nature.com/articles/s41467-023-38034-2
#' @references Matsushita, Y., Liu, J., Chu, A.K.Y. et al. Bone marrow endosteal
#' stem cells dictate active osteogenesis and aggressive tumorigenesis. Nat
#' Commun 14, 2383 (2023).
"rnaVelo"