helper_functions: Helper Functions

In CytobankAPI: Cytobank API Wrapper for R

Helper Functions

Description

Various helper functions to utilize within the Cytobank API.

Usage

helper.filter_names_to_ids_from_df(ids_names_df, names_array = c("*"))

helper.channel_ids_from_long_names(
  panels_list,
  long_channel_names,
  fcs_files = c()
)

Arguments

ids_names_df	dataframe containing both IDs and their associated names
names_array	vector or list of character regular expressions to use
panels_list	list provided from the panels.list endpoint
long_channel_names	vector of character representing long channel names
fcs_files	vector of integers representing a list of FCS file IDs

Details

helper.filter_names_to_ids_from_df Compile a vector of IDs from an array of regular expressions.

helper.channel_ids_from_long_names Compile a vector of IDs based on long channel names for specific FCS files from an experiment. If no FCS files are provided, IDs will be retrieved based on unique short channel / long channel combinations across all FCS files.

Examples

## Not run: helper.filter_names_to_ids_from_df(id_and_names_dataframe,
names_list=c("CD.*", "Time", "pp38"))

## End(Not run)
## Not run: helper.channel_ids_from_long_names(panels.list(cyto_session, 22),
  long_channel_names=c("long_channel1", "long_channel2"), fcs_files=c(1,2,3,4,5))

## End(Not run)

CytobankAPI documentation built on April 21, 2023, 9:08 a.m.