genome_createLocalMode: Generates an interactive genome browser.

In D3GB: Interactive Genome Browser

Generates an interactive genome browser.

Description

genome_createLocalMode creates an interactive genome browser to open directly in your browser.

Usage

genome_createLocalMode(gb, dir="GenomeBrowser")

Arguments

gb	a genome browser object produced by the function genomebrowser.
dir	a "character" string representing the directory where the graph will be saved.

Value

The function creates a folder in the working directory of your computer with an HTML document (index.html) which contains the graph. This file can be directly opened with your browser.

Author(s)

David Barrios and Carlos Prieto. Bioinformatics, University of Salamanca. See http://d3gb.usal.es/

See Also

The ‘D3GB’ Website: http://d3gb.usal.es

genomebrowser, createAssembly, getAssemblyFromFasta, GRCh37.bands, GRCh38.bands, genome_addGFF, genome_addSequence, genome_addTrack, genome_addVCF.

Examples

# Genome browser generation.
gb <- genomebrowser(GRCh38.bands)
# It creates a genome browser ready to be viewed in your browser.
genome_createLocalMode(gb,dir=tempfile())

D3GB documentation built on June 22, 2024, 9:35 a.m.