genome_createServerMode: Generates an interactive genome browser.

In D3GB: Interactive Genome Browser

Generates an interactive genome browser.

Description

genome_createServerMode creates an interactive genome browser to be shared as a website.

Usage

genome_createServerMode(gb, dir="GenomeBrowser")

Arguments

gb	a genome browser object produced by the function genomebrowser.
dir	a "character" string representing the directory where the graph will be saved.

Value

The function creates a website. Resulting folder should be added to the Apache applications directory. In this way the genome browser will be working as a web site.

Author(s)

David Barrios and Carlos Prieto. Bioinformatics, University of Salamanca. See http://d3gb.usal.es/

See Also

The ‘D3GB’ Website: http://d3gb.usal.es

genomebrowser, createAssembly, getAssemblyFromFasta, GRCh37.bands, GRCh38.bands, genome_addGFF, genome_addSequence, genome_addTrack, genome_addVCF.

Examples

# Genome browser generation.
gb <- genomebrowser(GRCh38.bands)
# It creates a website. You can add it to your Apache server.
genome_createServerMode(gb,dir=tempfile())

D3GB documentation built on June 22, 2024, 9:35 a.m.