endemicity_to_sse_states: Convert endemicity to SSE states
In DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees
View source: R/endemicity_to_sse_states.R
endemicity_to_sse_states R Documentation
Convert endemicity to SSE states
Description
Convert endemicity to SSE states
Usage
endemicity_to_sse_states(endemicity_status, sse_model = "musse")
Arguments
endemicity_status
character vector with values "endemic", "nonendemic"
and/or "not_present"
sse_model
either "musse" (default) or "geosse". MuSSE expects state
values 1, 2, 3, which here we encode as "not_present", "endemic",
"nonendemic", respectively. GeoSSE expects trait values 0, 1, 2, with 0 the
widespread state (here, "nonendemic"), and 1 and 2 are "not_present" and
"endemic", respectively.
Value
an integer vector of tip states, following the encoding expected by
the MuSSE/GeoSSE
DAISIEprep documentation built on April 3, 2025, 9:26 p.m.
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View source: R/endemicity_to_sse_states.R
| endemicity_to_sse_states | R Documentation |
Convert endemicity to SSE states
Description
Convert endemicity to SSE states
Usage
endemicity_to_sse_states(endemicity_status, sse_model = "musse")
Arguments
endemicity_status |
character vector with values "endemic", "nonendemic" and/or "not_present" |
sse_model |
either "musse" (default) or "geosse". MuSSE expects state values 1, 2, 3, which here we encode as "not_present", "endemic", "nonendemic", respectively. GeoSSE expects trait values 0, 1, 2, with 0 the widespread state (here, "nonendemic"), and 1 and 2 are "not_present" and "endemic", respectively. |
Value
an integer vector of tip states, following the encoding expected by the MuSSE/GeoSSE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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