is_duplicate_colonist: Determines if colonist has already been stored in...

In DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees

Determines if colonist has already been stored in Island_tbl class. This is used to stop endemic clades from being stored multiple times in the island table by checking if the endemicity status and branching times are identical.

Description

Determines if colonist has already been stored in Island_tbl class. This is used to stop endemic clades from being stored multiple times in the island table by checking if the endemicity status and branching times are identical.

Usage

is_duplicate_colonist(island_colonist, island_tbl)

Arguments

island_colonist	An instance of the Island_colonist class.
island_tbl	An instance of the Island_tbl class.

Value

Boolean

Examples

# with empty island_tbl
island_colonist <- island_colonist(
  clade_name = "bird",
  status = "endemic",
  missing_species = 0,
  col_time = 1.0,
  col_max_age = FALSE,
  branching_times = 0.5,
  species = "bird_a",
  clade_type = 1
)
island_tbl <- island_tbl()
is_duplicate_colonist(
  island_colonist = island_colonist,
  island_tbl = island_tbl
)

# with non-empty island_tbl
island_colonist <- island_colonist(
  clade_name = "bird",
  status = "endemic",
  missing_species = 0,
  col_time = 1.0,
  col_max_age = FALSE,
  branching_times = 0.5,
  species = c("bird_a", "bird_b"),
  clade_type = 1
)
island_tbl <- island_tbl()
island_tbl <- bind_colonist_to_tbl(
  island_colonist = island_colonist,
  island_tbl = island_tbl
)
island_colonist <- island_colonist(
  clade_name = "bird",
  status = "endemic",
  missing_species = 0,
  col_time = 1.0,
  col_max_age = FALSE,
  branching_times = 0.5,
  species = c("bird_a", "bird_b"),
  clade_type = 1
)
is_duplicate_colonist(
  island_colonist = island_colonist,
  island_tbl = island_tbl
)

DAISIEprep documentation built on April 3, 2025, 9:26 p.m.