extract_biogeobears_ancestral_states_probs: Extract ancestral state probabilities from BioGeoBEARS output
In DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees
View source: R/write_biogeobears_input.R
extract_biogeobears_ancestral_states_probs R Documentation
Extract ancestral state probabilities from BioGeoBEARS output
Description
Extract the probabilities of each endemicity status for tip and internal node
states from the output of an optimisation performed with BioGeoBEARS
Usage
extract_biogeobears_ancestral_states_probs(biogeobears_res)
Arguments
biogeobears_res
a list, the output of BioGeoBEARS::bears_optim_run()
Value
a data.frame with one row per node (tips and internals) and four
columns: label | not_present | endemic | nonendemic, the last three columns
containing the probability of each endemicity status (and summing to 1).
DAISIEprep documentation built on April 3, 2025, 9:26 p.m.
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View source: R/write_biogeobears_input.R
| extract_biogeobears_ancestral_states_probs | R Documentation |
Extract ancestral state probabilities from BioGeoBEARS output
Description
Extract the probabilities of each endemicity status for tip and internal node states from the output of an optimisation performed with BioGeoBEARS
Usage
extract_biogeobears_ancestral_states_probs(biogeobears_res)
Arguments
biogeobears_res |
a list, the output of |
Value
a data.frame with one row per node (tips and internals) and four columns: label | not_present | endemic | nonendemic, the last three columns containing the probability of each endemicity status (and summing to 1).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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