GetSim get similarity matrix from a distance matrix
A distance matrix
the similarity matrix is calculated at each temperature
Fushing, H., & McAssey, M. P. (2010). Time, temperature, and data cloud geometry. Physical Review E, 82(6), 061110.
Chen, C., & Fushing, H. (2012). Multiscale community geometry in a network and its application. Physical Review E, 86(4), 041120.
Fushing, H., Wang, H., VanderWaal, K., McCowan, B., & Koehl, P. (2013). Multi-scale clustering by building a robust and self correcting ultrametric topology on data points. PloS one, 8(2), e56259.
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