Description Usage Format Details Author(s) Examples
There are 19,9950 TF-to-target interaction pairs downloaded from UCSC (http://genome.ucsc.edu/).
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A data frame with 19,9950 observations 2 variables.
tf2target A data frame with 19,9950 observations 2 columns. TF-to-target interaction pairs.
We downloaded tfbsConsSites and tfbsConsFactors files from UCSC (http://genome.ucsc.edu). tfbsConsSites gives the coordinate information of all TFs acted on, tfbsConsFactors gives TFs identifier information. We can predict all the TFs to potential targets relationship based on refGene file which also came from UCSC and contained genes' position information of hg18. There are 199 TFs and 19,9950 TF-to-target interactions.
Jing Yang, Hui Yu
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TF gene
1 AHR 1/2-SBSRNA4
2 AHR A4GALT
3 AHR AAMP
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