Description Usage Arguments Details Value Author(s) References Examples
A method to pick out DCGs from microarray data based on 'Average Specific Connection' (ASC) (Choi et al. 2005).
1 |
exprs.1 |
a data frame or matrix for condition A, with rows as variables (genes) and columns as samples. |
exprs.2 |
a data frame or matrix for condition B, with rows as variables (genes) and columns as samples. |
link.method |
a character string indicating link filtration method, default is 'qth'. |
cutoff |
the cutoff of correlation-value, q-value or percent of links after link filtering. must be within [0,1]. |
ASC is the average value of the specific degree of the two conditions.
ASC |
the Average Specific Connections of genes. This measure can be used to rank gene in terms of differential coexpression. |
Bao-Hong Liu, Hui Yu
Choi, J.K., Yu, U., Yoo, O.J. and Kim, S. (2005) Differential coexpression analysis using microarray data and its application to human cancer, Bioinformatics, 21, 4348-4355.
1 2 3 |
AACS FSTL1 ELMO2 CREB3L1 RPS11 PNMA1 MMP2 SAMD4A
20.5 24.5 20.5 23.5 33.5 31.5 22.0 29.5
SMARCD3 A4GNT PKNOX2 RALYL ZHX3 ERCC5 GPR98 RXFP3
12.0 17.0 28.0 17.5 22.0 27.5 10.5 25.5
APBB2 BBOX1 PRO0478 XDH EDN1 MTERF AEN CLK4
26.0 19.0 18.0 18.0 15.5 17.5 14.5 24.5
KCNG1 CXCR4 DECR1 SALL1 PTPRR CADM4 IRAK1 CFHR5
25.0 19.0 18.5 22.5 16.5 17.0 25.0 17.5
TMSB10 CXCL3 LMAN1 CHD8 SUMO1 GP1BA OR7A10 DDB1
28.5 7.5 17.5 17.5 24.0 21.5 21.5 25.0
CHRNA10 STYK1 MYO9B CCNI MMP7 EP300 CRNKL1 C9orf45
20.5 13.5 20.0 15.0 15.0 17.5 27.5 22.5
XAB2 RTN1 HIC2 TBX10 CENPQ UTY OR2W1 KCNA6
17.5 19.0 18.0 25.5 20.0 9.5 27.0 28.5
ATP5G2 ZEB1 ERG FAT4 PARN SOD2 CYTH1 ADAM5P
20.5 27.0 14.0 25.5 20.0 14.5 21.5 28.5
CHD9 STK16 PDE1C SEMA4D AGPAT1 TOB2 BANK1 MAP3K3
24.0 11.5 23.0 14.5 14.0 10.0 14.5 24.0
MAX GRM2 OSBPL8 PROSC NR4A2 RICS PIR PPCS
7.5 28.5 30.0 20.5 10.5 15.0 19.5 24.0
IPO9 LONP1 EVC CXCL13 FFAR3 SCYL3 KIAA1199 SORL1
15.5 17.5 23.5 22.0 13.5 22.5 20.0 19.5
NAT10 CHD1 SYN3 DMC1 SLC22A2 SERPINF1 C20orf27 OR7A17
23.5 20.0 26.0 26.0 23.5 16.0 23.5 19.0
RPS6KA5 HMX1 DHRS11 LHB
10.5 20.5 16.5 11.5
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