DDHFm: Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
Version 1.1.2

Contains the normalizing and variance stabilizing Data-Driven Haar-Fisz algorithm. Also contains related algorithms for simulating from certain microarray gene intensity models and evaluation of certain transformations. Contains cDNA and shipping credit flow data.

AuthorEfthimios Motakis [aut], Guy Nason [aut, cre], Piotr Fryzlewicz [aut]
Date of publication2016-10-25 00:16:10
MaintainerGuy Nason <g.p.nason@bristol.ac.uk>
LicenseGPL-2
Version1.1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DDHFm")

Popular man pages

cdna: Example cDNA data
ddhft.np.2: Data-Driven Haar-Fisz transformation
ddhft.np.inv: Inverse Data-Driven Haar-Fisz transformation
isotone: Performs Isotone regression using "pool-adjacent-violators"...
KURTOSIS: Kurtosis Coefficient estimator
MOMENTS: Moment estimator
simdurbin: Gene intensities simulator
See all...

All man pages Function index File listing

Man pages

cdna: Example cDNA data
cDNAdata: Samples from the cDNA data vector
DDHFm: Data-driven Haar-Fisz for microarrays
ddhft.np.2: Data-Driven Haar-Fisz transformation
ddhft.np.inv: Inverse Data-Driven Haar-Fisz transformation
dhhrcomp: Simulated genes, apply DDHFm then compute and return...
dhhrss: Tabulates variance, skewness and kurtosis coefficients from...
function.from.vector: Function applied for the computation of the Data-Driven...
genesimulator: Gene means simulator
hftrialdatagen: Gene intensities simulator and DDHFm tester
isotone: Performs Isotone regression using "pool-adjacent-violators"...
KURTOSIS: Kurtosis Coefficient estimator
MOMENTS: Moment estimator
ShipCreditFlow: Example Shipping credit flow data
simdurbin: Gene intensities simulator
simdurbin2: Gene intensities simulator
SKEW: Skewness coefficient estimator
which.min.diff: Find index where two vectors are closest

Functions

DDHFm Man page
KURTOSIS Man page
MOMENTS Man page
SKEW Man page
ShipCreditFlow Man page
cDNAdata Man page
cdna Man page
ddhft.np.2 Man page
ddhft.np.inv Man page
dhhrcomp Man page
dhhrss Man page
function.from.vector Man page
genesimulator Man page
hftrialdatagen Man page
isotone Man page
simdurbin Man page
simdurbin2 Man page
which.min.diff Man page

Files

inst
inst/doc
inst/doc/DDHFm.Rnw
inst/doc/DDHFm.R
inst/doc/DDHFm.pdf
inst/CHANGES
src
src/DDHFm.c
NAMESPACE
data
data/ShipCreditFlow.rda
data/datalist
data/cdna.rda
R
R/SKEW.R
R/MOMENTS.R
R/DDHFm.R
R/genesimulator.R
R/KURTOSIS.R
R/ddhft.np.2.R
R/isotone.R
R/ddhft.np.inv.R
R/hftrialdatagen.R
R/function.from.vector.R
R/dhhrcomp.R
R/simdurbin2.R
R/cDNAdata.R
R/simdurbin.R
R/which.min.diff.R
R/dhhrss.R
vignettes
vignettes/DDHFm.Rnw
vignettes/DDHFm-cdna-vsn.pdf
vignettes/DDHFm-cdna-ddhfm.pdf
vignettes/DDHFm-cdna-compare.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/hftrialdatagen.Rd
man/simdurbin.Rd
man/ddhft.np.2.Rd
man/DDHFm.Rd
man/which.min.diff.Rd
man/genesimulator.Rd
man/MOMENTS.Rd
man/dhhrcomp.Rd
man/dhhrss.Rd
man/cDNAdata.Rd
man/simdurbin2.Rd
man/ddhft.np.inv.Rd
man/cdna.Rd
man/ShipCreditFlow.Rd
man/function.from.vector.Rd
man/isotone.Rd
man/SKEW.Rd
man/KURTOSIS.Rd
DDHFm documentation built on May 19, 2017, 8:44 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.