DDHFm: Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)

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Contains the normalizing and variance stabilizing Data-Driven Haar-Fisz algorithm. Also contains related algorithms for simulating from certain microarray gene intensity models and evaluation of certain transformations. Contains cDNA and shipping credit flow data.

Author
Efthimios Motakis [aut], Guy Nason [aut, cre], Piotr Fryzlewicz [aut]
Date of publication
2016-10-25 00:16:10
Maintainer
Guy Nason <g.p.nason@bristol.ac.uk>
License
GPL-2
Version
1.1.2

View on CRAN

Man pages

cdna
Example cDNA data
cDNAdata
Samples from the cDNA data vector
DDHFm
Data-driven Haar-Fisz for microarrays
ddhft.np.2
Data-Driven Haar-Fisz transformation
ddhft.np.inv
Inverse Data-Driven Haar-Fisz transformation
dhhrcomp
Simulated genes, apply DDHFm then compute and return...
dhhrss
Tabulates variance, skewness and kurtosis coefficients from...
function.from.vector
Function applied for the computation of the Data-Driven...
genesimulator
Gene means simulator
hftrialdatagen
Gene intensities simulator and DDHFm tester
isotone
Performs Isotone regression using "pool-adjacent-violators"...
KURTOSIS
Kurtosis Coefficient estimator
MOMENTS
Moment estimator
ShipCreditFlow
Example Shipping credit flow data
simdurbin
Gene intensities simulator
simdurbin2
Gene intensities simulator
SKEW
Skewness coefficient estimator
which.min.diff
Find index where two vectors are closest

Files in this package

DDHFm
DDHFm/inst
DDHFm/inst/doc
DDHFm/inst/doc/DDHFm.Rnw
DDHFm/inst/doc/DDHFm.R
DDHFm/inst/doc/DDHFm.pdf
DDHFm/inst/CHANGES
DDHFm/src
DDHFm/src/DDHFm.c
DDHFm/NAMESPACE
DDHFm/data
DDHFm/data/ShipCreditFlow.rda
DDHFm/data/datalist
DDHFm/data/cdna.rda
DDHFm/R
DDHFm/R/SKEW.R
DDHFm/R/MOMENTS.R
DDHFm/R/DDHFm.R
DDHFm/R/genesimulator.R
DDHFm/R/KURTOSIS.R
DDHFm/R/ddhft.np.2.R
DDHFm/R/isotone.R
DDHFm/R/ddhft.np.inv.R
DDHFm/R/hftrialdatagen.R
DDHFm/R/function.from.vector.R
DDHFm/R/dhhrcomp.R
DDHFm/R/simdurbin2.R
DDHFm/R/cDNAdata.R
DDHFm/R/simdurbin.R
DDHFm/R/which.min.diff.R
DDHFm/R/dhhrss.R
DDHFm/vignettes
DDHFm/vignettes/DDHFm.Rnw
DDHFm/vignettes/DDHFm-cdna-vsn.pdf
DDHFm/vignettes/DDHFm-cdna-ddhfm.pdf
DDHFm/vignettes/DDHFm-cdna-compare.pdf
DDHFm/MD5
DDHFm/build
DDHFm/build/vignette.rds
DDHFm/DESCRIPTION
DDHFm/man
DDHFm/man/hftrialdatagen.Rd
DDHFm/man/simdurbin.Rd
DDHFm/man/ddhft.np.2.Rd
DDHFm/man/DDHFm.Rd
DDHFm/man/which.min.diff.Rd
DDHFm/man/genesimulator.Rd
DDHFm/man/MOMENTS.Rd
DDHFm/man/dhhrcomp.Rd
DDHFm/man/dhhrss.Rd
DDHFm/man/cDNAdata.Rd
DDHFm/man/simdurbin2.Rd
DDHFm/man/ddhft.np.inv.Rd
DDHFm/man/cdna.Rd
DDHFm/man/ShipCreditFlow.Rd
DDHFm/man/function.from.vector.Rd
DDHFm/man/isotone.Rd
DDHFm/man/SKEW.Rd
DDHFm/man/KURTOSIS.Rd