DESnowball: Bagging with Distance-based Regression for Differential Gene Expression Analyses

This package implements a statistical data mining method to compare whole genome gene expression profiles, with respect to the presence of a recurrent genetic disturbance event, to identify the affected target genes.

Author
Yaomin Xu <yaomin.xu@vanderbilt.edu>
Date of publication
2014-01-04 04:19:06
Maintainer
Yaomin Xu <yaomin.xu@vanderbilt.edu>
License
GPL-3
Version
1.0
URLs

View on CRAN

Man pages

DESnowball-package
A R package implemented Snowball approach (see references)
plotJn
Plot Jn values
sb.expression
Gene expression data of 14 patients
sb.mutation
Mutation status of 14 patients
select.features
Compute ranking statistics, RD, and p value for gene...
snowball
main function for Snowball analysis
toplist
select the top list of genes

Files in this package

DESnowball
DESnowball/NAMESPACE
DESnowball/data
DESnowball/data/snowball.demoData.RData
DESnowball/R
DESnowball/R/agreement-part.r
DESnowball/R/combn-classlabel-idx.r
DESnowball/R/sample-classlabel.r
DESnowball/R/members.R
DESnowball/R/nmembers.R
DESnowball/R/snowball.r
DESnowball/R/select-features.r
DESnowball/R/leave-k-out-sample.r
DESnowball/R/weight-aggregate.r
DESnowball/R/plot-FIT.r
DESnowball/R/toplist.r
DESnowball/R/plot-Jn.r
DESnowball/R/plotprofile.R
DESnowball/R/rd.r
DESnowball/R/leave-k-out-combn.r
DESnowball/R/sb-expression-data.r
DESnowball/R/DESnowball-package.r
DESnowball/R/selection.r
DESnowball/R/parallel.r
DESnowball/R/rd-signed.r
DESnowball/R/seq-ncol.r
DESnowball/R/sb-mutation-data.r
DESnowball/R/gdbr.R
DESnowball/README.md
DESnowball/MD5
DESnowball/DESCRIPTION
DESnowball/man
DESnowball/man/plotJn.Rd
DESnowball/man/sb.expression.Rd
DESnowball/man/snowball.Rd
DESnowball/man/select.features.Rd
DESnowball/man/sb.mutation.Rd
DESnowball/man/DESnowball-package.Rd
DESnowball/man/toplist.Rd