plotJn: Plot Jn values

Description Usage Arguments

View source: R/plot-Jn.r

Description

Plot the J_n(x) values output from snowball, with significant genes highlighted. See references for more details.

Usage

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plotJn(x, fs, pch.nonsig = 21, pch.sig = 19, below.median = T,
  col.above = "red", col.below = "red")

Arguments

x

an output from snowball

fs

the corresponding output from select.features

pch.nonsig

pch of the symbols for non-significant genes. See par for more details

pch.sig

pch of the symbols for significant genes.

below.median

a logical value, set to TRUE if the genes blow the median are to be highlighted

col.above

set the highlight color for genes above the median

col.below

set the highlight color for genes below the median


DESnowball documentation built on May 29, 2017, 9:10 a.m.