Gene selection based on the statistical significances according to the Snowball approach (see references for more details).
select.features(x, cutoff.p = 0.05, p.adjust.method = "BH")
an output from the main function
cutoff for top gene list. This is applied on the multiple testing adjusted p values
specifies a multiple testing
adjustment method, see
a list with two elements -
fullLIst is a data.frame that
corresponding respectively to the RD, p value and an
indicator variable of weather the RD value is above or
below the median value.
selectedList is a data.frame
that contains the same variables as those in
fullList with only the top genes that satisfy the
significance cutoff specified by
Xu, Y., Guo, X., Sun, J. and Zhao. Z. Snowball: resampling combined with distance-based regression to discover transcriptional consequences of driver mutation, manuscript.
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