DESeqResMeta-class: An S4 class extending the DESeqResults object containing...

In DEVis: A Differential Expression Analysis Toolkit for Visual Analytics and Data Aggregation

Description

This class is used to separate and identify relevant pieces of data by various visualizations in this package.

Slots

numDE

The total number of differentially expressed genes in the result set.

numUp

The number of upregulated differentially expressed genes in the result set.

numDown

The number of downregulated differentially expressed genes in the result set.

allNames

The names of all differentially expressed genes in the result set.

upNames

The names of all upregulated differentially expressed genes in the result set.

downNames

The names of all downregulated differentially expressed genes in the result set.

case

The "case" condition that was used to make the contrast for this result set.

control

The "control" condition that was used to make the contrast for this result set.

contrast

The contrast that was made for this result set. I.E. case_vs_control

design_field

The field in the provided target data that was used for experimental design in differential expression. I.E. Condition_Time.

DEVis documentation built on May 2, 2019, 3:18 p.m.