init_cutoffs: Initialize cutoff values for significance and fold-change...

In DEVis: A Differential Expression Analysis Toolkit for Visual Analytics and Data Aggregation

Description

This function initializes the p-value cutoffs and log2foldChange values for most visualizations, filtering, and aggregation steps of this package. Significant differentially expressed genes will be initially determined based on the provided p-value cutoff and filtering, when appropriate, will generally be based on the provided log fold-change cutoff initialized by this function.

Usage

init_cutoffs(p_signif = 0.05, lfc_cut = 1)

Arguments

p_signif	P-value cutoff for determining DE genes. Default: 0.05
lfc_cut	Log2 fold-change cutoff. Default: 1

Value

This function does not return a value.

Examples

## Not run: 

init_cutoffs(p_signif=0.01, lfc_cut=1.5)


## End(Not run)

DEVis documentation built on May 2, 2019, 3:18 p.m.