NEWS.md
In DGEobj: Differential Gene Expression (DGE) Analysis Results Data Object

NEWS

Made all Bioconductor packages optional (suggested)
Added a new, minimal "mini" example object that has no internal Bioconductor-based features (ie normalization, analysis) to allow for clean, simple examples that do not depend on suggested packages
Testing updated so that when Bioconductor suggested packages are unavailable the tests will not be run

Updated tests and examples so that when suggested packages are unavailable the examples and/or tests dependent on them are not run

made GenomicRanges package optional - used only for exon/gene levels
added "protein" level data, reviewed/updated isoform data for proper handling
added imputationMatrix as a type of metadata
reworked reset to resolve issues and remove unneeded code
updated tests and documentation

significant documentation review/updates
underlying structure - added a few new fields and cleaned up unneeded methods
updated the example object with additional information
vignette now setup to use the precompiled paradigm

Initial public release to CRAN

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DGEobj documentation built on May 16, 2022, 9:06 a.m.

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