Methods for studying forensic DNA profiling, in particular familial database searches.
|Date of publication||2015-04-21 10:02:51|
|Maintainer||Maarten Kruijver <firstname.lastname@example.org>|
|License||GPL (>= 2)|
as.dbcompare: Convert output of ibs.pairwise.db for plotting using DNAtools...
check.dist: Check if dist is properly specified for use with sim.q,...
dist.pair.cdf: CDF of product of a pair of distributions (one cumulative)
dists.product: Distribution of product of several discrete random variables
dists.product.pair: Distribution of product of several discrete random variables...
dist.unique.events: Trim probability distribution to unique events with positive...
DNAprofiles-package: DNA profiles analysis
enum.profiles: Enumerate all attainable genotypes
est.freqs: Estimate allelic frequencies in reference database
exact.q: Compute exact LR exceedance probabilities
find.kth.element: Quickly finds the k'th largest element in a (large) vector
freqsNLngm: Allelic frequencies at 15 NGM loci
freqsNLsgmplus: Allelic frequencies at 10 SGMplus loci
freqsUScaucs: Allelic frequencies at 13 CODIS loci
get.freqs: Retrieve the allele frequencies of a profiles object
get.labels: Retrieve the allele labels from the allele frequencies
get.markers: Retrieve the markers of a profiles object
homozygous: For which markers is the profile homozygous/heterozygous?
ibdprobs: IBD probabilities
ibs.db: Counts IBS alleles between case profile and all database...
ibs.dist: Computes distribution of number of IBS alleles for profiles...
ibs.pairs: Counts IBS alleles between profile pairs
ibs.pairwise.db: Pairwise comparison of all database profiles on IBS alleles
ibs.pairwise.db.exp: Compute expected number of profiles pairs in a database that...
ibs.pairwise.pr: Compute the probabilities that two profiles match a number of...
ki: Computes Kinship Indices (KIs) for pairs of profiles
ki.cdf: Computes CDF of KI between case profile and profile with...
ki.db: Computes KIs for case profile(s) with all database profiles
ki.dist: Computes distribution of KI for profiles with stated...
ki.ibs.joint.dist: Computes joint distribution of KI and IBS for profiles with...
ki.precompute: Pre-computes KIs for use with 'ki.db' function
normalize.freqs: Normalizes allele frequencies such that their sum is 1
print.profiles: print profiles object
pr.next.allele: Probability of seeing next allele (Dirichlet sampling)
pr.next.alleles: Probability of seeing next alleles (Dirichlet sampling)
profiles: profiles object
profiles-extract: profiles extract
profiles.to.chars: Obtain STR repeat numbers of profiles as character matrix
recode.freqs: Recode allelic frequencies with different levels
rmp: Random match probability of profile(s)
sample.pairs: Sample random profile pairs with given relationship (sibs,...
sample.profiles: Sample random unrelated profiles
sample.relatives: Sample random relatives of one profile or many profiles
sim.q: Estimate LR exceedance probabilities (with importance...
write.genepop: Export to GenePop/LinkDos format