DNA Profiling Evidence Analysis

as.dbcompare | Convert output of ibs.pairwise.db for plotting using DNAtools... |

check.dist | Check if dist is properly specified for use with sim.q,... |

dist.pair.cdf | CDF of product of a pair of distributions (one cumulative) |

dists.product | Distribution of product of several discrete random variables |

dists.product.pair | Distribution of product of several discrete random variables... |

dist.unique.events | Trim probability distribution to unique events with positive... |

DNAprofiles-package | DNA profiles analysis |

enum.profiles | Enumerate all attainable genotypes |

est.freqs | Estimate allelic frequencies in reference database |

exact.q | Compute exact LR exceedance probabilities |

find.kth.element | Quickly finds the k'th largest element in a (large) vector |

freqsNLngm | Allelic frequencies at 15 NGM loci |

freqsNLsgmplus | Allelic frequencies at 10 SGMplus loci |

freqsUScaucs | Allelic frequencies at 13 CODIS loci |

get.freqs | Retrieve the allele frequencies of a profiles object |

get.labels | Retrieve the allele labels from the allele frequencies |

get.markers | Retrieve the markers of a profiles object |

homozygous | For which markers is the profile homozygous/heterozygous? |

ibdprobs | IBD probabilities |

ibs.db | Counts IBS alleles between case profile and all database... |

ibs.dist | Computes distribution of number of IBS alleles for profiles... |

ibs.pairs | Counts IBS alleles between profile pairs |

ibs.pairwise.db | Pairwise comparison of all database profiles on IBS alleles |

ibs.pairwise.db.exp | Compute expected number of profiles pairs in a database that... |

ibs.pairwise.pr | Compute the probabilities that two profiles match a number of... |

ki | Computes Kinship Indices (KIs) for pairs of profiles |

ki.cdf | Computes CDF of KI between case profile and profile with... |

ki.db | Computes KIs for case profile(s) with all database profiles |

ki.dist | Computes distribution of KI for profiles with stated... |

ki.ibs.joint.dist | Computes joint distribution of KI and IBS for profiles with... |

ki.precompute | Pre-computes KIs for use with 'ki.db' function |

normalize.freqs | Normalizes allele frequencies such that their sum is 1 |

print.profiles | print profiles object |

pr.next.allele | Probability of seeing next allele (Dirichlet sampling) |

pr.next.alleles | Probability of seeing next alleles (Dirichlet sampling) |

profiles | profiles object |

profiles-extract | profiles extract |

profiles.to.chars | Obtain STR repeat numbers of profiles as character matrix |

recode.freqs | Recode allelic frequencies with different levels |

rmp | Random match probability of profile(s) |

sample.pairs | Sample random profile pairs with given relationship (sibs,... |

sample.profiles | Sample random unrelated profiles |

sample.relatives | Sample random relatives of one profile or many profiles |

sim.q | Estimate LR exceedance probabilities (with importance... |

write.genepop | Export to GenePop/LinkDos format |

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