| as.dbcompare | Convert output of ibs.pairwise.db for plotting using DNAtools... |
| check.dist | Check if dist is properly specified for use with sim.q,... |
| dist.pair.cdf | CDF of product of a pair of distributions (one cumulative) |
| dists.product | Distribution of product of several discrete random variables |
| dists.product.pair | Distribution of product of several discrete random variables... |
| dist.unique.events | Trim probability distribution to unique events with positive... |
| DNAprofiles-package | DNA profiles analysis |
| enum.profiles | Enumerate all attainable genotypes |
| est.freqs | Estimate allelic frequencies in reference database |
| exact.q | Compute exact LR exceedance probabilities |
| find.kth.element | Quickly finds the k'th largest element in a (large) vector |
| freqsNLngm | Allelic frequencies at 15 NGM loci |
| freqsNLsgmplus | Allelic frequencies at 10 SGMplus loci |
| freqsUScaucs | Allelic frequencies at 13 CODIS loci |
| get.freqs | Retrieve the allele frequencies of a profiles object |
| get.labels | Retrieve the allele labels from the allele frequencies |
| get.markers | Retrieve the markers of a profiles object |
| homozygous | For which markers is the profile homozygous/heterozygous? |
| ibdprobs | IBD probabilities |
| ibs.db | Counts IBS alleles between case profile and all database... |
| ibs.dist | Computes distribution of number of IBS alleles for profiles... |
| ibs.pairs | Counts IBS alleles between profile pairs |
| ibs.pairwise.db | Pairwise comparison of all database profiles on IBS alleles |
| ibs.pairwise.db.exp | Compute expected number of profiles pairs in a database that... |
| ibs.pairwise.pr | Compute the probabilities that two profiles match a number of... |
| ki | Computes Kinship Indices (KIs) for pairs of profiles |
| ki.cdf | Computes CDF of KI between case profile and profile with... |
| ki.db | Computes KIs for case profile(s) with all database profiles |
| ki.dist | Computes distribution of KI for profiles with stated... |
| ki.ibs.joint.dist | Computes joint distribution of KI and IBS for profiles with... |
| ki.precompute | Pre-computes KIs for use with 'ki.db' function |
| normalize.freqs | Normalizes allele frequencies such that their sum is 1 |
| print.profiles | print profiles object |
| pr.next.allele | Probability of seeing next allele (Dirichlet sampling) |
| pr.next.alleles | Probability of seeing next alleles (Dirichlet sampling) |
| profiles | profiles object |
| profiles-extract | profiles extract |
| profiles.to.chars | Obtain STR repeat numbers of profiles as character matrix |
| recode.freqs | Recode allelic frequencies with different levels |
| rmp | Random match probability of profile(s) |
| sample.pairs | Sample random profile pairs with given relationship (sibs,... |
| sample.profiles | Sample random unrelated profiles |
| sample.relatives | Sample random relatives of one profile or many profiles |
| sim.q | Estimate LR exceedance probabilities (with importance... |
| write.genepop | Export to GenePop/LinkDos format |
