filter.by.conservation: Filters columns (sequence positions) by conservation
In DepLogo: Dependency Logo
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Filters columns based on the relative information content of each column
which is the standard information content normalized to the interval [0,1],
where 0 corresponds to uniform distribution and 1 to perfect conservation
of one nucleotide or amino acid, respectively.
Usage
1
filter.by.conservation(relative.ic)
Arguments
relative.ic
the maximum relative information content allowed
to retain a position
Value
function that, given a DLData object, returns TRUE
for every column that does not exceed the specified relative information content
Author(s)
Jan Grau <grau@informatik.uni-halle.de>
Examples
1
fun <- filter.by.conservation(relative.ic = 0.9)
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Description Usage Arguments Value Author(s) Examples
Description
Filters columns based on the relative information content of each column which is the standard information content normalized to the interval [0,1], where 0 corresponds to uniform distribution and 1 to perfect conservation of one nucleotide or amino acid, respectively.
Usage
1 | filter.by.conservation(relative.ic)
|
Arguments
relative.ic |
the maximum relative information content allowed to retain a position |
Value
function that, given a DLData object, returns TRUE
for every column that does not exceed the specified relative information content
Author(s)
Jan Grau <grau@informatik.uni-halle.de>
Examples
1 | fun <- filter.by.conservation(relative.ic = 0.9)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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