getPWM: Position weight matrix from DLData object
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getPWM R Documentation
Position weight matrix from DLData object
Description
Determines the position weight matrix from a DLData object as relative frequency of symbols
in each column of the data slot.
Usage
getPWM(part)
## S3 method for class 'DLData'
getPWM(part)
Arguments
part
the DLData object
Value
the position weight matrix, where columns correspond to positions
(columns of the DLData$data slot) and rows to symbols
Author(s)
Jan Grau <grau@informatik.uni-halle.de>
Examples
data <- DLData(c("ACGT", "ATTA"))
getPWM(data)
DepLogo documentation built on May 29, 2024, 9:53 a.m.
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| getPWM | R Documentation |
Position weight matrix from DLData object
Description
Determines the position weight matrix from a DLData object as relative frequency of symbols in each column of the data slot.
Usage
getPWM(part)
## S3 method for class 'DLData'
getPWM(part)
Arguments
part |
the DLData object |
Value
the position weight matrix, where columns correspond to positions (columns of the DLData$data slot) and rows to symbols
Author(s)
Jan Grau <grau@informatik.uni-halle.de>
Examples
data <- DLData(c("ACGT", "ATTA"))
getPWM(data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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