Analyzing and Visualizing Differential Correlation Networks in Biological Data

AraMetLeaves | A metabolite data set from Arabidopsis leaves by GC-TOF/MS |

AraMetRoots | A metabolite data set from Arabidopsis roots by GC-TOF/MS |

cluster.molecule | Hierarchical clustering of molecules |

comp.2.cc.fdr | Export differential correlations between two conditions |

compcorr | Compare two correlation coefficients |

cor2.test | Correlation Test |

cor.dist | Additional distance functions correlation distance (1-r) |

DiffCorr | Differential correlations in omics datasets |

generate_g | Generating graph from data matrix |

get.eigen.molecule | Get eigen molecule |

get.eigen.molecule.graph | Getting graph from eigengene module list |

get.lfdr | Getting local false discovery rate (lfdr) |

get.min.max | Get minimum and maximum |

plotClusterMolecules | Plot cluster molecules |

plotDiffCorrGroup | Plot DiffCorr group |

scalingMethods | scalingMethods |

uncent.cor2dist | Additional distance functions correlation distance... |

uncent.cordist | Calculating all pairwise distances using correlation distance |

write.modules | Writing modules into a text file |

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