Description Usage Arguments Value Author(s) Examples
Cluster molecules
1 2 | cluster.molecule(data, method = "pearson", linkage = "average",
absolute = FALSE)
|
data |
matrix or data frame |
method |
c("pearson", "spearman", "kendall", "euclidean", "maximum", "manhattan", "canberra", "binary", or "minkowski") |
linkage |
c("average", "ward", "single", "complete", "mcquitty", "median", "centroid") |
absolute |
if TRUE, then 1-|COR| else 1-COR, default is FALSE |
an object of class 'hclust'
Atsushi Fukushima
1 | cluster.molecule(as.matrix(t(iris[,1:4])), "pearson", "average")
|
sh: 1: cannot create /dev/null: Permission denied
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘pcaMethods’
The following object is masked from ‘package:stats’:
loadings
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:BiocGenerics’:
normalize, path, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Loading required package: fdrtool
Loading required package: multtest
Call:
hclust(d = dist, method = linkage)
Cluster method : average
Number of objects: 4
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