generate_speccomm: Generate Species Composition Matrix

In DivInsight: Diversity Index Calculation & Visualisation for Taxa and Location

Generate Species Composition Matrix

Description

Create a species composition matrix using a list of species tables.

Usage

generate_speccomm(spec_table_list)

Arguments

spec_table_list

A list of species tables created by the generate_spec_tables function.

Value

A species composition matrix

Examples

# create a SCM using a list of species counts tables
Colombia_Caquetá_dataframe <- subset(Colombia, stateProvince == "Caquetá")

Spec_Tables_Caquetá <- generate_spec_tables_df(

 dataframe = Colombia_Caquetá_dataframe,
 min_individuals = 30,
 min_species = 5

)

print(Spec_Tables_Caquetá$`2016-03-22`)
print(Spec_Tables_Caquetá$`2016-03-29`)
print(Spec_Tables_Caquetá$`2016-03-30`)
print(Spec_Tables_Caquetá$`2016-04-13`)

species_table_list <- list(

 Spec_Tables_Caquetá$`2016-03-22`,
 Spec_Tables_Caquetá$`2016-03-29`,
 Spec_Tables_Caquetá$`2016-03-30`,
 Spec_Tables_Caquetá$`2016-04-13`

)

SCM_Caquetá_2016 <- generate_speccomm(species_table_list)

print(SCM_Caquetá_2016)

DivInsight documentation built on Aug. 12, 2023, 9:06 a.m.