generate_spec_tables: Generate Species Tables

In DivInsight: Diversity Index Calculation & Visualisation for Taxa and Location

Generate Species Tables

Description

Generate a list of tables for species counts from the input clusterised object.

Usage

generate_spec_tables(clusterised_object, min_individuals = 0, min_species = 0)

Arguments

clusterised_object	An object created by the clusterise_sites function.
min_individuals	The minimum number of individuals in each table
min_species	The minimum number of species in each table.

Value

A list of species counts tables.

Examples

# generate species count tables with a minimum of 30 individuals from 5 species
Colombia_Caquetá_dataframe <- subset(Colombia, stateProvince == "Caquetá")

clusterised_Caquetá <- clusterise_sites(dataframe = Colombia_Caquetá_dataframe,
                                       cluster_min_length = 30,
                                       group_radius = 20000
)

Spec_Tables_Caquetá <- generate_spec_tables(

 clusterised_object = clusterised_Caquetá,
 min_individuals = 30,
 min_species = 5

)

print(Spec_Tables_Caquetá$`5.2016-03-22`)
print(Spec_Tables_Caquetá$`5.2016-03-29`)
print(Spec_Tables_Caquetá$`5.2016-03-30`)
print(Spec_Tables_Caquetá$`5.2016-04-13`)

DivInsight documentation built on Aug. 12, 2023, 9:06 a.m.