generate_stats: Generate Diversity Index Statistics

In DivInsight: Diversity Index Calculation & Visualisation for Taxa and Location

Generate Diversity Index Statistics

Description

Calculates diversity index values for each site in a clusterised object.

Usage

generate_stats(clusterised_object)

Arguments

clusterised_object

An object created by the clusterise_sites function.

Value

A dataframe where each row pertains to a site and each column has higher taxa labels, time & location data, as well as diversity index values.

Examples

# generate species count tables with a minimum of 30 individuals from 5 species
Colombia_Caquetá_dataframe <- subset(Colombia, stateProvince == "Caquetá")

clusterised_Caquetá <- clusterise_sites(dataframe = Colombia_Caquetá_dataframe,
                                       cluster_min_length = 30,
                                       group_radius = 20000
)

stats_Caquetá <- generate_stats(clusterised_Caquetá)

head(stats_Caquetá)

DivInsight documentation built on Aug. 12, 2023, 9:06 a.m.