Files in DrDimont

Drug Response Prediction from Differential Multi-Omics Networks

R/pipeline_functions.R R/utils-pipe.R R/drug_targets.R R/utilities.R R/settings.R R/network_generation.R R/data_documentations.R R/network_reduction.R R/interaction_score.R R/checks.R R/graph_combination.R inst/doc/DrDimont_Vignette.R inst/doc/DrDimont_Vignette.Rmd vignettes/DrDimont_Vignette.Rmd man/run_pipeline.Rd man/combined_graphs_example.Rd man/load_interaction_score_output.Rd man/sample_size.Rd man/check_drug_targets_in_layers.Rd man/generate_differential_score_graph.Rd man/drug_gene_interactions.Rd man/find_targets.Rd man/write_interaction_score_input.Rd man/check_input.Rd man/generate_individual_graphs.Rd man/drdimont_settings.Rd man/differential_graph_example.Rd man/graph_metrics.Rd man/individual_graphs_example.Rd man/chunk.Rd man/mrna_data.Rd man/generate_interaction_score_graphs.Rd man/shutdown_cluster.Rd man/generate_combined_graphs.Rd man/layers_example.Rd man/target_edge_list.Rd man/make_drug_target.Rd man/make_layer.Rd man/drug_response_scores_example.Rd man/drug_target_edges_example.Rd man/install_python_dependencies.Rd man/network_reduction_by_pickHardThreshold.Rd man/combine_graphs.Rd man/get_layer_setting.Rd man/check_drug_target.Rd man/protein_data.Rd man/create_unique_layer_node_ids.Rd man/compute_correlation_matrices.Rd man/generate_reduced_graph.Rd man/pipe.Rd man/make_connection.Rd man/set_cluster.Rd man/get_layer.Rd man/check_sensible_connections.Rd man/compute_drug_response_scores.Rd man/network_reduction_by_p_value.Rd man/inter_layer_edgelist_by_id.Rd man/return_errors.Rd man/check_layer.Rd man/check_connection.Rd man/interaction_score_graphs_example.Rd man/determine_drug_targets.Rd man/metabolite_protein_interactions.Rd man/inter_layer_edgelist_by_table.Rd man/metabolite_data.Rd man/calculate_interaction_score.Rd man/chunk_2gether.Rd man/corPvalueStudentParallel.Rd man/correlation_matrices_example.Rd man/phosphosite_data.Rd