htmlresult: Html report from the result of the 'hyperGTest' function
In EMA: Easy Microarray Data Analysis

Description Usage Arguments Details Value Author(s) See Also

Create a html report from the result of a call to 'hyperGTest'

1	htmlresult(hgOver, filename, app = FALSE, categorySize = 1, pvalue=0.05)

`hgOver`	result from a call to 'hyperGTest'
`filename`	file name with path for html result
`app`	if TRUE, overwrite the pre-existing html report file, by default FALSE
`categorySize`	an integer, minimum size for category, by default =1
`pvalue`	the pvalue threshold for significance, default =0.05

htmlresult needs packages GOstats and GO.db from Bioconductor.

An html report with the result from a call to 'hyperGTest'

Id, pvalue, Odd Ratio, Expected Count, Count, Size and Term are returned

Nicolas Servant, Eleonore Gravier, Pierre Gestraud, Cecile Laurent, Caroline Paccard, Anne Biton, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupe

hyperGTest,runHyperGO

EMA documentation built on March 26, 2020, 8:40 p.m.