Description Usage Arguments Details Value Author(s) See Also
Create a html report from the result of a call to 'hyperGTest'
1 | htmlresult(hgOver, filename, app = FALSE, categorySize = 1, pvalue=0.05)
|
hgOver |
result from a call to 'hyperGTest' |
filename |
file name with path for html result |
app |
if TRUE, overwrite the pre-existing html report file, by default FALSE |
categorySize |
an integer, minimum size for category, by default =1 |
pvalue |
the pvalue threshold for significance, default =0.05 |
htmlresult
needs packages GOstats
and GO.db
from Bioconductor.
An html report with the result from a call to 'hyperGTest'
Id, pvalue, Odd Ratio, Expected Count, Count, Size and Term are returned
Nicolas Servant, Eleonore Gravier, Pierre Gestraud, Cecile Laurent, Caroline Paccard, Anne Biton, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupe
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