keggReport: Text report from the result of the 'hyperGTest' function for...
In EMA: Easy Microarray Data Analysis

Description Usage Arguments Details Value Author(s) See Also

Create a txt report with the significant probesets for each significant KEGG pathway from the result of a call to 'hyperGTest'

1	keggReport(hgOver,fileout = "report.txt", pack.annot, pvalue = 0.05)

`hgOver`	result from a call to 'hyperGTest'
`fileout`	name of txt file, by default "report.txt"
`pack.annot`	the annotation package to use
`pvalue`	cutoff for significant pvalue, by default 0.05

keggReport needs packages GOstats and KEGG.db from Bioconductor.

Txt report with the results of a call to 'hyperGTest'

Nicolas Servant, Eleonore Gravier, Pierre Gestraud, Cecile Laurent, Caroline Paccard, Anne Biton, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupe

hyperGTest,runHyperKEGG

EMA documentation built on March 26, 2020, 8:40 p.m.