API for EMC2
Bayesian Hierarchical Analysis of Cognitive Models of Choice
| Global functions | |
|---|---|
| DDM | Man page Source code |
| DDMGNG | Man page Source code |
| EMC2 | Man page |
| EMC2-package | Man page |
| IC | Source code |
| LBA | Man page Source code |
| LNR | Man page Source code |
| RDM | Man page Source code |
| SBC_hierarchical | Source code |
| SBC_single | Source code |
| SDT | Man page Source code |
| accept_progress_bar | Source code |
| accept_rate | Source code |
| add_Ffunctions | Source code |
| add_accumulators | Source code |
| add_bound | Source code |
| add_constants | Source code |
| add_defaults | Source code |
| add_design_fMRI_predict | Source code |
| add_info | Source code |
| add_info_SEM | Source code |
| add_info_blocked | Source code |
| add_info_diag | Source code |
| add_info_diag_gamma | Source code |
| add_info_factor | Source code |
| add_info_infnt_factor | Source code |
| add_info_single | Source code |
| add_info_standard | Source code |
| add_prior_names | Source code |
| add_proposals | Source code |
| add_recalculated_pars | Source code |
| add_trials | Source code |
| apply_contrasts | Source code |
| assign_colors | Source code |
| assign_ltys | Source code |
| auto_mclapply | Source code |
| auto_thin | Man page Source code |
| auto_thin.emc | Man page Source code |
| block_variance_idx | Source code |
| bridge_add_group | Source code |
| bridge_add_group_SEM | Source code |
| bridge_add_group_blocked | Source code |
| bridge_add_group_diag | Source code |
| bridge_add_group_factor | Source code |
| bridge_add_group_single | Source code |
| bridge_add_group_standard | Source code |
| bridge_add_info | Source code |
| bridge_add_info_SEM | Source code |
| bridge_add_info_blocked | Source code |
| bridge_add_info_diag | Source code |
| bridge_add_info_factor | Source code |
| bridge_add_info_single | Source code |
| bridge_add_info_standard | Source code |
| bridge_group_and_prior_and_jac | Source code |
| bridge_group_and_prior_and_jac_SEM | Source code |
| bridge_group_and_prior_and_jac_blocked | Source code |
| bridge_group_and_prior_and_jac_diag | Source code |
| bridge_group_and_prior_and_jac_factor | Source code |
| bridge_group_and_prior_and_jac_single | Source code |
| bridge_group_and_prior_and_jac_standard | Source code |
| bridge_sampling | Source code |
| build_fmri_design_matrices | Source code |
| build_hrf_kernel | Source code |
| c_add_charvectors | Source code |
| calc_functions | Source code |
| calc_ll | Source code |
| calc_ll_R | Source code |
| calc_ll_manager | Source code |
| chain_n | Man page Source code |
| check | Man page Source code |
| check.emc | Man page Source code |
| check_data_plot | Source code |
| check_epsilon | Source code |
| check_gd | Source code |
| check_mix | Source code |
| check_prior | Source code |
| check_prop_performance | Source code |
| check_rt | Source code |
| check_sampling_settings | Source code |
| check_tune_settings | Source code |
| check_var_prior | Source code |
| combine_factors | Source code |
| compare | Man page Source code |
| compare_MLL | Source code |
| compare_subject | Man page Source code |
| compress_dadm | Source code |
| compute_convolved_regressor | Source code |
| compute_def_dens | Source code |
| compute_gamma_diff_hrf | Source code |
| compute_glover_hrf | Source code |
| compute_glover_time_derivative | Source code |
| concat_emc | Source code |
| constrain_lambda | Source code |
| construct_design_matrix | Source code |
| contr.anova | Man page Source code |
| contr.bayes | Man page Source code |
| contr.decreasing | Man page Source code |
| contr.increasing | Man page Source code |
| convert_prior_input | Source code |
| create_chain_proposals | Source code |
| create_covariates | Source code |
| create_eff_proposals | Source code |
| create_group_key | Source code |
| credible | Man page Source code |
| credible.emc | Man page Source code |
| credint | Man page Source code |
| credint.emc | Man page Source code |
| credint.emc.prior | Man page Source code |
| dDDM | Source code |
| dLNR | Source code |
| dRDM | Source code |
| dWald | Source code |
| design | Man page Source code |
| design_model | Source code |
| design_model_custom_ll | Source code |
| dlba | Source code |
| dm_list | Source code |
| do_bound | Source code |
| do_pre_transform | Source code |
| do_transform | Source code |
| draw_noise_paths_DDM | Source code |
| draw_noise_paths_race | Source code |
| ess_summary | Man page Source code |
| ess_summary.emc | Man page Source code |
| eval.unnormalized.posterior | Source code |
| extend_obj | Source code |
| extend_sampler | Source code |
| extractDadms | Source code |
| extract_samples | Source code |
| fft_convolve_equiv_cpp | Source code |
| fill_bound | Source code |
| fill_samples | Source code |
| fill_samples_RE | Source code |
| fill_samples_SEM | Source code |
| fill_samples_base | Source code |
| fill_samples_diag_gamma | Source code |
| fill_samples_factor | Source code |
| fill_samples_infnt_factor | Source code |
| fill_samples_standard | Source code |
| fill_transform | Source code |
| filter_const_and_dup | Source code |
| filter_emc | Source code |
| filter_obj | Source code |
| filter_sub_and_par | Source code |
| filtered_samples | Source code |
| filtered_samples_SEM | Source code |
| filtered_samples_factor | Source code |
| filtered_samples_infnt_factor | Source code |
| filtered_samples_single | Source code |
| filtered_samples_standard | Source code |
| find_duplicate_indices | Source code |
| fit | Man page Source code |
| fit.emc | Man page Source code |
| fit_remove_samples | Source code |
| fix_dots | Source code |
| fix_dots_plot | Source code |
| fix_fileName | Source code |
| fix_single_object | Source code |
| fix_single_prior | Source code |
| forstmann | Man page |
| gd_summary | Man page Source code |
| gd_summary.emc | Man page Source code |
| gelman_diag_robust | Source code |
| generate_design_equations | Source code |
| get_BayesFactor | Man page Source code |
| get_all_pars_blocked | Source code |
| get_all_pars_diag | Source code |
| get_all_pars_infnt_factor | Source code |
| get_all_pars_standard | Source code |
| get_alphas | Source code |
| get_base | Source code |
| get_cell_param | Source code |
| get_conditionals | Source code |
| get_conditionals_SEM | Source code |
| get_conditionals_blocked | Source code |
| get_conditionals_diag | Source code |
| get_conditionals_factor | Source code |
| get_conditionals_infnt_factor | Source code |
| get_conditionals_single | Source code |
| get_conditionals_standard | Source code |
| get_data | Man page Source code |
| get_data.emc | Man page Source code |
| get_def_cdf | Source code |
| get_default_mix | Source code |
| get_defect_scalars | Source code |
| get_design | Man page Source code |
| get_design.emc | Man page Source code |
| get_design.emc.prior | Man page Source code |
| get_emc_functions | Source code |
| get_group_level | Source code |
| get_group_level_SEM | Source code |
| get_group_level_single | Source code |
| get_group_level_standard | Source code |
| get_idx | Source code |
| get_last_stage | Source code |
| get_mu_implied | Source code |
| get_objects | Source code |
| get_objects_SEM | Source code |
| get_objects_blocked | Source code |
| get_objects_diag | Source code |
| get_objects_diag_gamma | Source code |
| get_objects_factor | Source code |
| get_objects_infnt_factor | Source code |
| get_objects_single | Source code |
| get_objects_standard | Source code |
| get_param_means | Source code |
| get_pars | Man page Source code |
| get_pars_matrix | Source code |
| get_posterior_quantiles | Source code |
| get_posterior_weights | Source code |
| get_prior | Man page Source code |
| get_prior.emc | Man page Source code |
| get_prior_SEM | Source code |
| get_prior_blocked | Source code |
| get_prior_diag | Source code |
| get_prior_diag_gamma | Source code |
| get_prior_factor | Source code |
| get_prior_infnt_factor | Source code |
| get_prior_single | Source code |
| get_prior_standard | Source code |
| get_ranks_ESS | Source code |
| get_recovery_stats | Source code |
| get_startpoints | Source code |
| get_startpoints_SEM | Source code |
| get_startpoints_blocked | Source code |
| get_startpoints_diag | Source code |
| get_startpoints_diag_gamma | Source code |
| get_startpoints_factor | Source code |
| get_startpoints_infnt_factor | Source code |
| get_startpoints_single | Source code |
| get_startpoints_standard | Source code |
| get_stop_criteria | Source code |
| get_summary_stat | Source code |
| gibbs_step | Source code |
| gibbs_step_SEM | Source code |
| gibbs_step_blocked | Source code |
| gibbs_step_diag | Source code |
| gibbs_step_diag_gamma | Source code |
| gibbs_step_factor | Source code |
| gibbs_step_infnt_factor | Source code |
| gibbs_step_single | Source code |
| gibbs_step_standard | Source code |
| group_IC | Source code |
| group__IC_SEM | Source code |
| group__IC_single | Source code |
| group__IC_standard | Source code |
| group_dist_blocked | Source code |
| group_dist_diag | Source code |
| group_dist_infnt_factor | Source code |
| group_dist_standard | Source code |
| h.unnormalized.posterior | Source code |
| hypothesis | Man page Source code |
| hypothesis.emc | Man page Source code |
| init | Source code |
| init_chains | Man page Source code |
| last_sample_SEM | Source code |
| last_sample_diag_gamma | Source code |
| last_sample_factor | Source code |
| last_sample_infnt_factor | Source code |
| last_sample_standard | Source code |
| loadRData | Source code |
| log_likelihood_ddm | Source code |
| log_likelihood_ddmgng | Source code |
| log_likelihood_joint | Source code |
| log_likelihood_race | Source code |
| log_likelihood_sdt | Source code |
| logdinvGamma | Source code |
| make_3dim_mcmc | Source code |
| make_data | Man page Source code |
| make_data_fMRI | Source code |
| make_design_fmri | Source code |
| make_design_plot | Source code |
| make_dm | Source code |
| make_emc | Man page Source code |
| make_factor_diagram | Source code |
| make_info | Source code |
| make_missing | Source code |
| make_mri_sampling_design | Source code |
| make_nice_summary | Source code |
| make_pmat | Source code |
| make_prior_idx | Source code |
| make_random_effects | Man page Source code |
| make_recov_summary | Source code |
| make_smooth | Source code |
| map_mcmc | Source code |
| map_p | Source code |
| mapped_pars | Man page Source code |
| mapped_pars.emc | Man page Source code |
| mapped_pars.emc.design | Man page Source code |
| mapped_pars.emc.prior | Man page Source code |
| merge_chains | Man page Source code |
| merge_group_level | Source code |
| merge_priors | Source code |
| model_averaging | Man page Source code |
| normal_mri | Source code |
| numbers_from_proportion | Source code |
| pDDM | Source code |
| pLNR | Source code |
| pPROBIT | Source code |
| pRDM | Source code |
| pWald | Source code |
| pairs_posterior | Man page Source code |
| parameters | Man page Source code |
| parameters.emc | Man page Source code |
| parameters.emc.prior | Man page Source code |
| particle_draws | Source code |
| plba | Source code |
| plot.emc | Man page Source code |
| plot.emc.design | Man page Source code |
| plot.emc.prior | Man page Source code |
| plot_cdf | Man page Source code |
| plot_density | Man page Source code |
| plot_design | Man page Source code |
| plot_design.emc | Man page Source code |
| plot_design.emc.design | Man page Source code |
| plot_design.emc.prior | Man page Source code |
| plot_fit_choice | Source code |
| plot_hrf | Source code |
| plot_mcmc | Source code |
| plot_mcmc_list | Source code |
| plot_pars | Man page Source code |
| plot_relations | Man page Source code |
| plot_roc | Source code |
| plot_sbc_ecdf | Man page Source code |
| plot_sbc_hist | Man page Source code |
| plot_stat | Man page Source code |
| pmwgs | Source code |
| predict.emc | Man page Source code |
| predict.emc.prior | Man page Source code |
| prep_data_plot | Source code |
| print.emc | Source code |
| print.emc.design | Source code |
| print.emc.prior | Source code |
| prior | Man page Source code |
| prior_dist_blocked | Source code |
| prior_dist_diag | Source code |
| prior_dist_infnt_factor | Source code |
| prior_dist_standard | Source code |
| prior_help | Man page Source code |
| profile_plot | Man page Source code |
| prompt_for_prior_updates | Source code |
| rDDM | Source code |
| rLBA | Source code |
| rLNR | Source code |
| rPROBIT | Source code |
| rRDM | Source code |
| rWald | Source code |
| rearrange_loadings | Source code |
| recovery | Man page Source code |
| recovery.emc | Man page Source code |
| remove_samples | Source code |
| reset_pm_settings | Source code |
| restore_duplicates | Source code |
| return_single_sampler | Source code |
| riwish | Source code |
| robust_density | Source code |
| robust_hist | Source code |
| rt_check_function | Source code |
| run.iterative.scheme | Source code |
| run_bridge_sampling | Man page Source code |
| run_emc | Man page Source code |
| run_hyper | Source code |
| run_sbc | Man page Source code |
| run_stage | Source code |
| run_stages | Source code |
| rwish | Source code |
| sample_store | Source code |
| sample_store_SEM | Source code |
| sample_store_base | Source code |
| sample_store_diag_gamma | Source code |
| sample_store_factor | Source code |
| sample_store_infnt_factor | Source code |
| sample_store_standard | Source code |
| sampled_pars | Man page Source code |
| sampled_pars.default | Source code |
| sampled_pars.emc | Man page Source code |
| sampled_pars.emc.design | Man page Source code |
| sampled_pars.emc.prior | Man page Source code |
| samples_LNR | Man page |
| set_p_accept | Source code |
| set_tune_ess | Source code |
| single_DDM_plot | Source code |
| single_LNR_plot | Source code |
| single_out_joint | Source code |
| single_race_plot | Source code |
| sp_new | Source code |
| split_along_dim | Source code |
| split_mcl | Source code |
| standardize_loadings | Source code |
| start_proposals | Source code |
| std_error_IS2 | Source code |
| strip_duplicates | Source code |
| sub_blocking | Source code |
| subset.emc | Man page Source code |
| summary.emc | Man page Source code |
| summary.emc.design | Man page Source code |
| summary.emc.prior | Man page Source code |
| suppress_output | Source code |
| test_adapted | Source code |
| unwind | Source code |
| unwind_chol | Source code |
| unwind_diag_IS2 | Source code |
| unwind_lambda | Source code |
| update2version | Man page Source code |
| update_epsilon | Source code |
| update_epsilon_continuous | Source code |
| update_epsilon_scale | Source code |
| update_pm_settings | Source code |
| update_prior_element | Source code |
| update_prior_input | Source code |
| update_progress_bar | Source code |
| verbal_dm | Source code |
| weighted_moments | Source code |
| white_mri | Source code |
