all_cluster_tissues: Clusters tissues using all group means
In EMMIXgene: A Mixture Model-Based Approach to the Clustering of Microarray Expression Data
Description
Usage
Arguments
Value
Examples
Description
Clusters tissues using all group means
Usage
1
all_cluster_tissues(gen, clusters, q = 6, G = 2)
Arguments
gen
EMMIXgene object
clusters
mclust object
q
number of factors if using mfa
G
number of components if using mfa
Value
a clustering for each sample (columns) by each group(rows)
Examples
1
2
3
4
5
example <- plot_single_gene(alon_data,1)
#only run on first 100 genes for speed
alon_sel <- select_genes(alon_data[seq_len(100), ])
alon_clust<- cluster_genes(alon_sel , 2)
alon_tissue_all<-all_cluster_tissues(alon_sel, alon_clust, q=1, G=2)
EMMIXgene documentation built on March 26, 2020, 7:12 p.m.
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Description Usage Arguments Value Examples
Description
Clusters tissues using all group means
Usage
1 | all_cluster_tissues(gen, clusters, q = 6, G = 2)
|
Arguments
gen |
EMMIXgene object |
clusters |
mclust object |
q |
number of factors if using mfa |
G |
number of components if using mfa |
Value
a clustering for each sample (columns) by each group(rows)
Examples
1 2 3 4 5 | example <- plot_single_gene(alon_data,1)
#only run on first 100 genes for speed
alon_sel <- select_genes(alon_data[seq_len(100), ])
alon_clust<- cluster_genes(alon_sel , 2)
alon_tissue_all<-all_cluster_tissues(alon_sel, alon_clust, q=1, G=2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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